Gm5334 Pseudogene Detail

Summary

• Symbol
  Gm5334
• Name
  predicted pseudogene 5334

• Feature Type
  pseudogene
• IDs
  MGI:3644545
  NCBI Gene: 384639
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:68268586-68269305 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 37.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644545	pseudogene	Chr7:68268204-68269757 (+)
129S1/SvImJ	ENSMUSG00200013311	pseudogene	Chr7:54983337-54984056 (+)
A/J	ENSMUSG00195013729	pseudogene	Chr7:59407905-59408624 (+)
AKR/J	ENSMUSG00220021027	pseudogene	Chr7:52908551-52909270 (+)
BALB/cJ	ENSMUSG00180004896	pseudogene	Chr7:56117794-56118513 (+)
C3H/HeJ	ENSMUSG00175011561	pseudogene	Chr7:56910291-56911010 (+)
C57BL/6NJ	ENSMUSG00215021502	pseudogene	Chr7:56045837-56046556 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036906	pseudogene	Chr7:71320743-71322286 (+)
CAST/EiJ	ENSTCUG00005012209	pseudogene	Chr7:59597815-59598534 (+)
CBA/J	ENSMUSG00210019982	pseudogene	Chr7:56748733-56749452 (+)
DBA/2J	ENSMUSG00185001229	pseudogene	Chr7:61093990-61094709 (+)
FVB/NJ	ENSMUSG00205004525	pseudogene	Chr7:56754385-56755104 (+)
JF1/MsJ	ENSUMUG00000010715	pseudogene	Chr7:65819259-65819978 (+)
LP/J	ENSMUSG00230021280	pseudogene	Chr7:67177331-67178050 (+)
NOD/ShiLtJ	ENSMUSG00190007310	pseudogene	Chr7:56857029-56857748 (+)
NZO/HlLtJ	ENSMUSG00225017062	pseudogene	Chr7:65460251-65460970 (+)
PWK/PhJ	ENSLUMG00010019078	pseudogene	Chr7:55381264-55381983 (+)
SPRET/EiJ	ENSMSPG00010003579	pseudogene	Chr7:55741524-55742243 (+)
WSB/EiJ	ENSIUOG00005005508	pseudogene	Chr7:57275895-57276614 (+)

Homology

• Gene Tree
  Gm5334
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5334
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000094854 (Evidence)
• NCBI Gene
  384639

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094854	Ensembl Gene Model | MGI Sequence Detail	720	C57BL/6J
transcript	ENSMUST00000187472	Ensembl | MGI Sequence Detail	720	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 16

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67