Gm5285 Pseudogene Detail

Summary

• Symbol
  Gm5285
• Name
  predicted gene 5285

• Feature Type
  pseudogene
• IDs
  MGI:3644519
  NCBI Gene: 383956
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:154981695-154982360 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 79.61 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644519	pseudogene	Chr3:154981695-154982369 (-)
129S1/SvImJ	ENSMUSG00200000093	pseudogene	Chr3:151952602-151953267 (-)
129S1/SvImJ	ENSMUSG00200049054	pseudogene	Chr5:131827621-131828282 (+)
129S1/SvImJ	ENSMUSG00200049066	pseudogene	Chr5:131843542-131844203 (+)
A/J	ENSMUSG00195002760	pseudogene	Chr3:152081862-152082527 (-)
AKR/J	ENSMUSG00220000431	pseudogene	Chr3:150494348-150495013 (-)
BALB/cJ	ENSMUSG00180006683	pseudogene	Chr3:151933713-151934378 (-)
C3H/HeJ	ENSMUSG00175003391	pseudogene	Chr3:151550249-151550914 (-)
C57BL/6NJ	ENSMUSG00215004383	pseudogene	Chr3:152181264-152181929 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001460	pseudogene	Chr3:152620955-152621280 (-)
CBA/J	ENSMUSG00210000377	pseudogene	Chr3:152178297-152178962 (-)
DBA/2J	ENSMUSG00185000101	pseudogene	Chr3:152819828-152820493 (-)
FVB/NJ	ENSMUSG00205039621	pseudogene	Chr11:9555344-9555995 (-)
FVB/NJ	ENSMUSG00205002863	pseudogene	Chr1:133654861-133655512 (-)
FVB/NJ	ENSMUSG00205009671	pseudogene	Chr3:151112059-151112724 (-)
JF1/MsJ	ENSUMUG00000036443	pseudogene	Chr3:151566440-151566765 (-)
LP/J	ENSMUSG00230009784	pseudogene	Chr3:154701574-154702239 (-)
NOD/ShiLtJ	ENSMUSG00190007567	pseudogene	Chr3:153166449-153167114 (-)
NZO/HlLtJ	ENSMUSG00225006254	pseudogene	Chr3:157214374-157215039 (-)
PWK/PhJ	ENSLUMG00010001918	pseudogene	Chr3:151520161-151520826 (-)
SPRET/EiJ	ENSMSPG00010000337	pseudogene	Chr3:152880551-152880876 (-)
WSB/EiJ	ENSIUOG00005003469	pseudogene	Chr3:152286593-152286918 (-)

Homology

• Gene Tree
  Gm5285
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000103511 (Evidence)
• NCBI Gene
  383956

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103511	Ensembl Gene Model | MGI Sequence Detail	666	C57BL/6J
transcript	ENSMUST00000193089	Ensembl | MGI Sequence Detail	666	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;