Gm5493 Gene Detail

Summary

• Symbol
  Gm5493
• Name
  predicted gene 5493

• Feature Type
  lncRNA gene
• IDs
  MGI:3644511
  NCBI Gene: 433078
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:22958918-22970491 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  381 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644511	lncRNA gene	Chr17:22958913-22972647 (+)
129S1/SvImJ	ENSMUSG00200038705	lncRNA gene	Chr17:18505280-18516846 (+)
A/J	ENSMUSG00195038214	lncRNA gene	Chr17:19515963-19527529 (+)
AKR/J	ENSMUSG00220026565	lncRNA gene	Chr17:18523808-18535372 (+)
BALB/cJ	ENSMUSG00180017917	lncRNA gene	Chr17:18806069-18817635 (+)
C3H/HeJ	ENSMUSG00175041880	lncRNA gene	Chr17:18464600-18481475 (+)
C57BL/6NJ	ENSMUSG00215043473	lncRNA gene	Chr17:18451672-18463236 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021142	protein coding gene	Chr17:18633715-18640722 (+)
CAST/EiJ	ENSTCUG00005023479	lncRNA gene	Chr17:19136860-19148467 (+)
CBA/J	ENSMUSG00210040529	lncRNA gene	Chr17:18231563-18243127 (+)
DBA/2J	ENSMUSG00185054785	lncRNA gene	Chr17:20612351-20623917 (+)
FVB/NJ	ENSMUSG00205037365	lncRNA gene	Chr17:18944905-18956469 (+)
JF1/MsJ	ENSUMUG00000037513	lncRNA gene	Chr17:20049044-20060652 (+)
LP/J	ENSMUSG00230055149	lncRNA gene	Chr17:22010264-22021830 (+)
NOD/ShiLtJ	ENSMUSG00190038073	lncRNA gene	Chr17:18441851-18453415 (+)
NZO/HlLtJ	ENSMUSG00225054825	lncRNA gene	Chr17:23933332-23944899 (+)
PWK/PhJ	ENSLUMG00010020589	lncRNA gene	Chr17:18034971-18046583 (+)
SPRET/EiJ	ENSMSPG00010040762	lncRNA gene	Chr17:19414184-19431347 (+)
WSB/EiJ	ENSIUOG00005040320	lncRNA gene	Chr17:19237688-19249256 (+)

Homology

• Gene Tree
  Gm5493
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm5493
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  4

• Ensembl
  ENSMUSG00000098164 (Evidence)
• NCBI Gene
  433078

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098164	Ensembl Gene Model | MGI Sequence Detail	11574	C57BL/6J
transcript	ENSMUST00000182063	Ensembl | MGI Sequence Detail	1951	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 22

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964