Gm5904 Pseudogene Detail

Summary

• Symbol
  Gm5904
• Name
  predicted gene 5904

• Feature Type
  pseudogene
• IDs
  MGI:3644469
  NCBI Gene: 546009
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:136258938-136259802 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 81.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644469	pseudogene	Chr7:136258938-136259999 (+)
129S1/SvImJ	ENSMUSG00200047579	pseudogene	Chr7:122813462-122814326 (+)
A/J	ENSMUSG00195042289	pseudogene	Chr7:127284305-127285169 (+)
AKR/J	ENSMUSG00220016899	pseudogene	Chr7:120747080-120747944 (+)
BALB/cJ	ENSMUSG00180040884	pseudogene	Chr7:123987807-123988671 (+)
C3H/HeJ	ENSMUSG00175042878	pseudogene	Chr7:124716483-124717347 (+)
C57BL/6NJ	ENSMUSG00215047475	pseudogene	Chr7:123979036-123979900 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051491	pseudogene	Chr7:127289504-127290368 (+)
CBA/J	ENSMUSG00210032299	pseudogene	Chr7:124482360-124483224 (+)
DBA/2J	ENSMUSG00185024468	pseudogene	Chr7:128775443-128776307 (+)
FVB/NJ	ENSMUSG00205046168	pseudogene	Chr7:124443872-124444736 (+)
JF1/MsJ	ENSUMUG00000051834	pseudogene	Chr7:133836893-133837757 (+)
LP/J	ENSMUSG00230043538	pseudogene	Chr7:134917126-134917990 (+)
NOD/ShiLtJ	ENSMUSG00190030143	pseudogene	Chr7:124592896-124593760 (+)
NZO/HlLtJ	ENSMUSG00225052395	pseudogene	Chr7:133147914-133148778 (+)
PWK/PhJ	ENSLUMG00010049346	pseudogene	Chr7:122998827-122999691 (+)
SPRET/EiJ	ENSMSPG00010044992	pseudogene	Chr7:124309413-124310282 (+)
WSB/EiJ	ENSIUOG00005037610	pseudogene	Chr7:125297176-125298040 (+)

Homology

• Gene Tree
  Gm5904
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000109894 (Evidence)
• NCBI Gene
  546009

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109894	Ensembl Gene Model | MGI Sequence Detail	865	C57BL/6J
transcript	ENSMUST00000210286	Ensembl | MGI Sequence Detail	865	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;