Gm10482 Gene Detail

Summary

• Symbol
  Gm10482
• Name
  predicted gene 10482
• Synonyms
  EG433844

• Feature Type
  lncRNA gene
• IDs
  MGI:3644444
  NCBI Gene: 433844
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:10237833-10287857 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 3.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1187 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644444	lncRNA gene	Chr5:10237833-10287857 (+)
129S1/SvImJ	ENSMUSG00200002924	lncRNA gene	Chr5:6988566-7038648 (+)
A/J	ENSMUSG00195012601	lncRNA gene	Chr5:6945884-6995910 (+)
A/J	ENSMUSG00195012911	lncRNA gene	Chr5:7786650-7790547 (-)
AKR/J	ENSMUSG00220002061	lncRNA gene	Chr5:6883129-6934607 (+)
BALB/cJ	ENSMUSG00180017156	lncRNA gene	Chr5:6697983-6748004 (+)
C3H/HeJ	ENSMUSG00175029432	lncRNA gene	Chr5:6888950-6938967 (+)
C57BL/6NJ	ENSMUSG00215028513	lncRNA gene	Chr5:7154818-7204859 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001809	lncRNA gene	Chr5:7024392-7073504 (+)
CBA/J	ENSMUSG00210002928	lncRNA gene	Chr5:7239341-7289365 (+)
DBA/2J	ENSMUSG00185030212	lncRNA gene	Chr5:7241569-7291593 (+)
FVB/NJ	ENSMUSG00205008259	lncRNA gene	Chr5:6944322-6994128 (+)
JF1/MsJ	ENSUMUG00000003943	lncRNA gene	Chr5:7311912-7361971 (+)
LP/J	ENSMUSG00230003370	lncRNA gene	Chr5:11243067-11293149 (+)
NOD/ShiLtJ	ENSMUSG00190013838	lncRNA gene	Chr5:6754982-6805001 (+)
NZO/HlLtJ	ENSMUSG00225008647	lncRNA gene	Chr5:14947685-14997688 (+)
PWK/PhJ	ENSLUMG00010019999	lncRNA gene	Chr5:7183610-7232408 (+)
SPRET/EiJ	ENSMSPG00010005290	lncRNA gene	Chr5:7233370-7237423 (+)
WSB/EiJ	ENSIUOG00005026368	lncRNA gene	Chr5:6970987-7021007 (+)

Homology

• Gene Tree
  Gm10482
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000073226 (Evidence)
• NCBI Gene
  433844

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073226	Ensembl Gene Model | MGI Sequence Detail	50025	C57BL/6J
transcript	ENSMUST00000189825	Ensembl | MGI Sequence Detail	2287	Not Applicable
polypeptide	Q3ULR5	UniProt | EBI | MGI Sequence Detail	210	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR037679 Anaphase-promoting complex subunit 5
  IPR026000 Anaphase-promoting complex subunit 5 domain

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm10482:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45163	Chr5:10283921-10283927 (+)	46,091 bp