Gm5548 Pseudogene Detail

Summary

• Symbol
  Gm5548
• Name
  predicted pseudogene 5548

• Feature Type
  pseudogene
• IDs
  MGI:3644344
  NCBI Gene: 102632213
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:112961205-112961601 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 49.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644344	pseudogene	Chr3:112959780-112961601 (-)
129S1/SvImJ	ENSMUSG00200035728	pseudogene	Chr3:109608036-109608432 (-)
A/J	ENSMUSG00195025993	pseudogene	Chr3:110006285-110006681 (-)
AKR/J	ENSMUSG00220033955	pseudogene	Chr3:108396583-108396979 (-)
BALB/cJ	ENSMUSG00180020755	pseudogene	Chr3:109979871-109980267 (-)
C3H/HeJ	ENSMUSG00175030333	pseudogene	Chr3:109514453-109514849 (-)
C57BL/6NJ	ENSMUSG00215036276	pseudogene	Chr3:110236799-110237195 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027197	pseudogene	Chr3:110466371-110466749 (-)
CBA/J	ENSMUSG00210009040	pseudogene	Chr3:110109218-110109614 (-)
DBA/2J	ENSMUSG00185022711	pseudogene	Chr3:110589401-110589797 (-)
FVB/NJ	ENSMUSG00205033189	pseudogene	Chr3:109150261-109150657 (-)
JF1/MsJ	ENSUMUG00000005453	pseudogene	Chr3:109582590-109582986 (-)
LP/J	ENSMUSG00230012887	pseudogene	Chr3:112502937-112503333 (-)
NOD/ShiLtJ	ENSMUSG00190042177	pseudogene	Chr3:110912699-110913095 (-)
NZO/HlLtJ	ENSMUSG00225003696	pseudogene	Chr3:115011888-115012284 (-)
PWK/PhJ	ENSLUMG00010025118	pseudogene	Chr3:109427583-109427979 (-)
SPRET/EiJ	ENSMSPG00010037868	pseudogene	Chr3:110030117-110030513 (-)
WSB/EiJ	ENSIUOG00005005260	pseudogene	Chr3:110142425-110142821 (-)

Homology

• Gene Tree
  Gm5548
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5548
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000045952 (Evidence)
• NCBI Gene
  102632213

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045952	Ensembl Gene Model | MGI Sequence Detail	397	C57BL/6J
transcript	ENSMUST00000055878	Ensembl | MGI Sequence Detail	397	Not Applicable

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426