Gm7974 Pseudogene Detail

Summary

• Symbol
  Gm7974
• Name
  predicted gene 7974

• Feature Type
  pseudogene
• IDs
  MGI:3644332
  NCBI Gene: 666199
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:54221176-54241593 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 30.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644332	pseudogene	ChrX:54221176-54241593 (+)
129S1/SvImJ	ENSMUSG00200038388	pseudogene	ChrX:36823042-36849332 (+)
A/J	ENSMUSG00195018224	pseudogene	ChrX:40435337-40462016 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034678	pseudogene	ChrX:20804478-20834001 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185034964	pseudogene	ChrX:48771077-48771220 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000033603	pseudogene	ChrX:68021134-68041221 (+)
JF1/MsJ	ENSUMUG00000033654	pseudogene	ChrX:68493109-68508635 (+)
JF1/MsJ	ENSUMUG00000030436	pseudogene	ChrX:68239900-68259020 (+)
JF1/MsJ	ENSUMUG00000030383	pseudogene	ChrX:67647371-67651330 (+)
JF1/MsJ	ENSUMUG00000033703	pseudogene	ChrX:70127438-70147506 (+)
JF1/MsJ	ENSUMUG00000030506	pseudogene	ChrX:70003799-70024155 (+)
JF1/MsJ	ENSUMUG00000030490	pseudogene	ChrX:68852302-68852445 (+)
LP/J	ENSMUSG00230030839	pseudogene	ChrX:55818790-55839208 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225032714	pseudogene	ChrX:61059737-61080154 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010026755	pseudogene	ChrX:39161177-39189401 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm7974
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000080889 (Evidence)
• NCBI Gene
  666199

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080889	Ensembl Gene Model | MGI Sequence Detail	20418	C57BL/6J
transcript	ENSMUST00000117154	Ensembl | MGI Sequence Detail	408	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;