Gm6853 Pseudogene Detail

Summary

• Symbol
  Gm6853
• Name
  predicted gene 6853

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3644291
  NCBI Gene: 628189
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:30671893-30673553 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 16.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644291	pseudogene	Chr8:30667960-30674018 (-)
129S1/SvImJ	ENSMUSG00200022402	pseudogene	Chr8:25711513-25717939 (-)
A/J	no annotation
AKR/J	ENSMUSG00220026594	pseudogene	Chr8:25974761-25981187 (-)
BALB/cJ	ENSMUSG00180005769	pseudogene	Chr8:25767472-25773896 (-)
C3H/HeJ	ENSMUSG00175007112	pseudogene	Chr8:23010591-23115780 (+)
C57BL/6NJ	ENSMUSG00215013872	pseudogene	Chr8:25734441-25740373 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023680	pseudogene	Chr8:25893100-25900732 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185002230	pseudogene	Chr8:31662920-31669344 (-)
FVB/NJ	ENSMUSG00205004413	pseudogene	Chr8:24962812-24969232 (-)
JF1/MsJ	ENSUMUG00000008027	pseudogene	Chr8:33377732-33383659 (-)
LP/J	ENSMUSG00230015932	pseudogene	Chr8:35319741-35326167 (-)
NOD/ShiLtJ	ENSMUSG00190004706	pseudogene	Chr8:25791343-25797771 (-)
NZO/HlLtJ	ENSMUSG00225022109	pseudogene	Chr8:38947740-38953669 (-)
PWK/PhJ	ENSLUMG00010027254	pseudogene	Chr8:25678824-25684692 (-)
SPRET/EiJ	ENSMSPG00010016511	pseudogene	Chr8:26295129-26301821 (-)
WSB/EiJ	no annotation

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000109586 (Evidence), ENSMUSG00000121403 (Evidence)
• NCBI Gene
  628189

Representative Sequences			Length	Strain/Species
genomic	628189	NCBI Gene Model | MGI Sequence Detail	1661	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6853:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80811	Chr8:30673991-30673995 (-)	-440 bp