Gm5688 Pseudogene Detail

Summary

• Symbol
  Gm5688
• Name
  predicted gene 5688

• Feature Type
  pseudogene
• IDs
  MGI:3644279
  NCBI Gene: 435558
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:20632372-20633644 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 11.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644279	pseudogene	Chr18:20632276-20633654 (+)
129S1/SvImJ	ENSMUSG00200019855	pseudogene	Chr18:17638334-17639606 (+)
A/J	ENSMUSG00195002405	pseudogene	Chr18:17783517-17784789 (+)
AKR/J	ENSMUSG00220012009	pseudogene	Chr18:17785360-17786632 (+)
BALB/cJ	ENSMUSG00180004133	pseudogene	Chr18:18244819-18246091 (+)
C3H/HeJ	ENSMUSG00175004562	pseudogene	Chr18:17732029-17733301 (+)
C57BL/6NJ	ENSMUSG00215003723	pseudogene	Chr18:17483921-17485193 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015066	pseudogene	Chr18:17523286-17524558 (+)
CBA/J	ENSMUSG00210020518	pseudogene	Chr18:17796254-17797526 (+)
DBA/2J	ENSMUSG00185008613	pseudogene	Chr18:17753476-17754748 (+)
FVB/NJ	ENSMUSG00205016935	pseudogene	Chr18:17491361-17492633 (+)
JF1/MsJ	ENSUMUG00000027358	pseudogene	Chr18:17803832-17805103 (+)
LP/J	ENSMUSG00230012459	pseudogene	Chr18:19834546-19835818 (+)
NOD/ShiLtJ	ENSMUSG00190017548	pseudogene	Chr18:17568233-17569505 (+)
NZO/HlLtJ	ENSMUSG00225028271	pseudogene	Chr18:19757599-19758871 (+)
PWK/PhJ	ENSLUMG00010016130	pseudogene	Chr18:17983974-17985248 (+)
SPRET/EiJ	ENSMSPG00010004916	pseudogene	Chr18:17898830-17900102 (+)
WSB/EiJ	ENSIUOG00005020246	pseudogene	Chr18:17595571-17596843 (+)

Homology

• Gene Tree
  Gm5688
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117480 (Evidence)
• NCBI Gene
  435558

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117480	Ensembl Gene Model | MGI Sequence Detail	1273	C57BL/6J
transcript	ENSMUST00000234005	Ensembl | MGI Sequence Detail	1273	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5688:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150161	Chr18:20632266-20632273 (+)	-102 bp