Gm5444 Gene Detail

Summary

• Symbol
  Gm5444
• Name
  predicted gene 5444

• Feature Type
  lncRNA gene
• IDs
  MGI:3644242
  NCBI Gene: 432723
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:4821650-4886484 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 2.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1708 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644242	lncRNA gene	Chr13:4821650-4886484 (+)
129S1/SvImJ	ENSMUSG00200006735	lncRNA gene	Chr13:2008854-2073452 (+)
A/J	ENSMUSG00195012738	lncRNA gene	Chr13:1417153-1481755 (+)
AKR/J	ENSMUSG00220013618	lncRNA gene	Chr13:1692734-1757626 (+)
BALB/cJ	ENSMUSG00180009683	lncRNA gene	Chr13:1829309-1893910 (+)
C3H/HeJ	ENSMUSG00175008839	lncRNA gene	Chr13:1844250-1909085 (+)
C57BL/6NJ	ENSMUSG00215025909	lncRNA gene	Chr13:2064107-2128944 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018207	protein coding gene	Chr13:1413188-1470345 (+)
CAST/EiJ	ENSTCUG00005025604	lncRNA gene	Chr13:2087372-2158417 (+)
CBA/J	ENSMUSG00210022875	lncRNA gene	Chr13:1382908-1447740 (+)
DBA/2J	ENSMUSG00185025748	lncRNA gene	Chr13:2070689-2135523 (+)
FVB/NJ	ENSMUSG00205028625	lncRNA gene	Chr13:1833809-1898404 (+)
JF1/MsJ	ENSUMUG00000011262	lncRNA gene	Chr13:2078261-2181213 (+)
LP/J	ENSMUSG00230007578	lncRNA gene	Chr13:11550939-11636043 (+)
NOD/ShiLtJ	ENSMUSG00190014077	lncRNA gene	Chr13:1529821-1594711 (+)
NZO/HlLtJ	ENSMUSG00225034678	lncRNA gene	Chr13:5438100-5541053 (+)
PWK/PhJ	ENSLUMG00010017381	lncRNA gene	Chr13:1469156-1528616 (+)
SPRET/EiJ	ENSMSPG00010026987	lncRNA gene	Chr13:1519732-1585909 (+)
WSB/EiJ	ENSIUOG00005022220	lncRNA gene	Chr13:1424742-1489649 (+)

Homology

• Gene Tree
  Gm5444
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  2
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000053499 (Evidence)
• NCBI Gene
  432723

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000053499	Ensembl Gene Model | MGI Sequence Detail	64835	C57BL/6J
transcript	ENSMUST00000065956	Ensembl | MGI Sequence Detail	2468	Not Applicable
polypeptide	Q8CDE5	UniProt | EBI | MGI Sequence Detail	116	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;