Gm5082 Gene Detail

Summary

• Symbol
  Gm5082
• Name
  predicted gene 5082

• Feature Type
  lncRNA gene
• IDs
  MGI:3644232
  NCBI Gene: 328231
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:41802919-41810253 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 20.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  289 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644232	lncRNA gene	Chr13:41802919-41810253 (+)
129S1/SvImJ	ENSMUSG00200012954	lncRNA gene	Chr13:39076111-39083436 (+)
A/J	ENSMUSG00195035937	lncRNA gene	Chr13:38136001-38143324 (+)
AKR/J	ENSMUSG00220032886	lncRNA gene	Chr13:37923246-37930571 (+)
BALB/cJ	ENSMUSG00180008736	lncRNA gene	Chr13:38442475-38449800 (+)
C3H/HeJ	ENSMUSG00175013798	lncRNA gene	Chr13:38407327-38414649 (+)
C57BL/6NJ	ENSMUSG00215014462	lncRNA gene	Chr13:38544096-38551419 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018461	protein coding gene	Chr13:36954503-36955335 (+)
CAST/EiJ	ENSTCUG00005034775	lncRNA gene	Chr13:38441822-38449190 (+)
CBA/J	ENSMUSG00210012066	lncRNA gene	Chr13:38412999-38420321 (+)
DBA/2J	ENSMUSG00185034048	lncRNA gene	Chr13:39207351-39214676 (+)
FVB/NJ	ENSMUSG00205030974	lncRNA gene	Chr13:38162263-38169593 (+)
JF1/MsJ	ENSUMUG00000038713	lncRNA gene	Chr13:38746761-38754613 (+)
LP/J	ENSMUSG00230018014	lncRNA gene	Chr13:48545147-48552472 (+)
NOD/ShiLtJ	ENSMUSG00190012842	lncRNA gene	Chr13:38606609-38613934 (+)
NZO/HlLtJ	ENSMUSG00225036909	lncRNA gene	Chr13:42314202-42321527 (+)
PWK/PhJ	ENSLUMG00010030855	lncRNA gene	Chr13:37598010-37605307 (+)
SPRET/EiJ	ENSMSPG00010010823	lncRNA gene	Chr13:37655290-37662829 (+)
WSB/EiJ	ENSIUOG00005029873	lncRNA gene	Chr13:37744784-37752082 (+)

Homology

• Gene Tree
  Gm5082
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5082
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS49249.1

• Ensembl
  ENSMUSG00000054258 (Evidence)
• NCBI Gene
  328231

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054258	Ensembl Gene Model | MGI Sequence Detail	7335	C57BL/6J
transcript	ENSMUST00000221920	Ensembl | MGI Sequence Detail	1518	Not Applicable
polypeptide	Q8CAZ0	UniProt | EBI | MGI Sequence Detail	138	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 3

  Genomic 1

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69