Gvin-ps7 Pseudogene Detail

Summary

• Symbol
  Gvin-ps7
• Name
  GTPase, very large interferon inducible, pseudogene 7
• Synonyms
  Gm8995

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3644223
  NCBI Gene: 668139
• Alliance
  gene page
• Transcription Start Sites
  39 TSS

Location &
Maps

• Sequence Map
  Chr7:106103093-106128409 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 55.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  421 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644223	pseudogene	Chr7:106103093-106128409 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040656	pseudogene	Chr7:109094890-109862159 (-)
A/J	MGP_AJ_G0040653	pseudogene	Chr7:106248448-107205512 (-)
AKR/J	MGP_AKRJ_G0040583	pseudogene	Chr7:109012735-109912604 (-)
BALB/cJ	MGP_BALBcJ_G0040644	pseudogene	Chr7:105952497-106918681 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0041337	pseudogene	Chr7:114095045-114313015 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0040250	pseudogene	Chr7:117233027-118119513 (-)
DBA/2J	MGP_DBA2J_G0040462	pseudogene	Chr7:104504652-105354063 (-)
FVB/NJ	MGP_FVBNJ_G0040387	pseudogene	Chr7:104315169-105073093 (-)
LP/J	MGP_LPJ_G0040499	pseudogene	Chr7:110500342-111451445 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gvin-ps7
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000063286 (Evidence), ENSMUSG00000121501 (Evidence)
• NCBI Gene
  668139

Representative Sequences			Length	Strain/Species
genomic	668139	NCBI Gene Model | MGI Sequence Detail	25317	C57BL/6J
transcript	AK172683	GenBank | ENA | DDBJ | MGI Sequence Detail	4365	NOD
polypeptide	Q8C9P2	UniProt | EBI | MGI Sequence Detail	377	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gvin-ps7:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr74157	Chr7:106128365-106128409 (-)	22 bp
Tssr74156	Chr7:106118383-106118396 (-)	10,019 bp
Tssr74155	Chr7:106112957-106112968 (-)	15,446 bp
Tssr74154	Chr7:106110820-106110838 (-)	17,580 bp
Tssr74153	Chr7:106110777-106110798 (-)	17,621 bp
Tssr74152	Chr7:106110738-106110760 (-)	17,660 bp
Tssr74151	Chr7:106110492-106110506 (-)	17,910 bp
Tssr74150	Chr7:106110119-106110132 (-)	18,283 bp
Tssr74149	Chr7:106110084-106110096 (-)	18,319 bp
Tssr74148	Chr7:106109605-106109626 (-)	18,793 bp
Tssr74147	Chr7:106109329-106109340 (-)	19,074 bp
Tssr74146	Chr7:106109261-106109280 (-)	19,138 bp
Tssr74145	Chr7:106108713-106108721 (-)	19,692 bp
Tssr74144	Chr7:106108608-106108636 (-)	19,787 bp
Tssr74143	Chr7:106108418-106108433 (-)	19,983 bp
Tssr74142	Chr7:106106353-106106379 (-)	22,043 bp
Tssr74141	Chr7:106106210-106106225 (-)	22,191 bp
Tssr74140	Chr7:106105810-106105835 (-)	22,586 bp
Tssr74139	Chr7:106105755-106105782 (-)	22,640 bp
Tssr74138	Chr7:106105721-106105740 (-)	22,678 bp
Tssr74137	Chr7:106105691-106105702 (-)	22,712 bp
Tssr74136	Chr7:106105625-106105636 (-)	22,778 bp
Tssr74135	Chr7:106105557-106105590 (-)	22,835 bp
Tssr74134	Chr7:106105474-106105510 (-)	22,917 bp
Tssr74133	Chr7:106105247-106105255 (-)	23,158 bp
Tssr74132	Chr7:106104548-106104598 (-)	23,836 bp
Tssr74131	Chr7:106104379-106104422 (-)	24,008 bp
Tssr74130	Chr7:106104199-106104211 (-)	24,204 bp
Tssr74129	Chr7:106104152-106104162 (-)	24,252 bp
Tssr74128	Chr7:106103619-106103631 (-)	24,784 bp
Tssr74127	Chr7:106103522-106103551 (-)	24,872 bp
Tssr74126	Chr7:106103370-106103400 (-)	25,024 bp
Tssr74125	Chr7:106103356-106103364 (-)	25,049 bp
Tssr74124	Chr7:106103311-106103353 (-)	25,077 bp
Tssr74123	Chr7:106103280-106103308 (-)	25,115 bp
Tssr74122	Chr7:106103261-106103275 (-)	25,141 bp
Tssr74121	Chr7:106103219-106103258 (-)	25,170 bp
Tssr74120	Chr7:106103184-106103195 (-)	25,219 bp
Tssr74119	Chr7:106103166-106103178 (-)	25,237 bp