Rpl19-ps6 Pseudogene Detail

Summary

• Symbol
  Rpl19-ps6
• Name
  ribosomal protein L19, pseudogene 6
• Synonyms
  Gm6196

• Feature Type
  pseudogene
• IDs
  MGI:3644218
  NCBI Gene: 621001
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:8004556-8005141 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 3.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644218	pseudogene	Chr15:8004530-8005229 (+)
129S1/SvImJ	ENSMUSG00200034097	pseudogene	Chr15:4980438-4981023 (+)
A/J	ENSMUSG00195010816	pseudogene	Chr15:4897833-4898418 (+)
AKR/J	ENSMUSG00220023107	pseudogene	Chr15:4735885-4736470 (+)
BALB/cJ	ENSMUSG00180036361	pseudogene	Chr15:4874999-4875584 (+)
C3H/HeJ	ENSMUSG00175034109	pseudogene	Chr15:5041529-5042114 (+)
C57BL/6NJ	ENSMUSG00215030486	pseudogene	Chr15:4888230-4888815 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026687	pseudogene	Chr15:4915358-4915944 (+)
CBA/J	ENSMUSG00210025666	pseudogene	Chr15:5026512-5027097 (+)
DBA/2J	ENSMUSG00185032272	pseudogene	Chr15:4975038-4975623 (+)
FVB/NJ	ENSMUSG00205031868	pseudogene	Chr15:4899165-4899750 (+)
JF1/MsJ	ENSUMUG00000036703	pseudogene	Chr15:4987039-4987624 (+)
LP/J	ENSMUSG00230020338	pseudogene	Chr15:8473537-8474122 (+)
NOD/ShiLtJ	ENSMUSG00190010312	pseudogene	Chr15:4969139-4969724 (+)
NZO/HlLtJ	ENSMUSG00225034736	pseudogene	Chr15:8725505-8726090 (+)
PWK/PhJ	ENSLUMG00010036756	pseudogene	Chr15:5013529-5014115 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005030497	pseudogene	Chr15:4879936-4880521 (+)

Homology

• Gene Tree
  Rpl19-ps6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Rpl19-ps6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000116090 (Evidence)
• NCBI Gene
  621001

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116090	Ensembl Gene Model | MGI Sequence Detail	586	C57BL/6J
transcript	ENSMUST00000229131	Ensembl | MGI Sequence Detail	586	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;

TSS for Rpl19-ps6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130580	Chr15:8004515-8004529 (+)	-34 bp