A230006K03Rik Gene Detail

Summary

• Symbol
  A230006K03Rik
• Name
  RIKEN cDNA A230006K03 gene
• Synonyms
  CAG-3, CAG-8, DOKist2, EG330549, Gm31445, Gm7414

• Feature Type
  lncRNA gene
• IDs
  MGI:3644205
  NCBI Gene: 27493
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:60844731-60961397 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  3356 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644205	lncRNA gene	Chr7:60780270-60961584 (-)
129S1/SvImJ	ENSMUSG00200008835	lncRNA gene	Chr7:47509470-47697733 (-)
A/J	ENSMUSG00195013263	lncRNA gene	Chr7:51930649-52114454 (-)
AKR/J	ENSMUSG00220011799	lncRNA gene	Chr7:45444421-45632744 (-)
BALB/cJ	ENSMUSG00180011170	lncRNA gene	Chr7:48631377-48819698 (-)
C3H/HeJ	ENSMUSG00175003547	lncRNA gene	Chr7:49393176-49581443 (-)
C57BL/6NJ	ENSMUSG00215002118	lncRNA gene	Chr7:48567703-48751445 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012194	lncRNA gene	Chr7:52199284-52373637 (-)
CBA/J	ENSMUSG00210017504	lncRNA gene	Chr7:49294866-49483113 (-)
DBA/2J	ENSMUSG00185006406	lncRNA gene	Chr7:53712559-53891550 (-)
FVB/NJ	ENSMUSG00205001582	lncRNA gene	Chr7:49253772-49439682 (-)
JF1/MsJ	ENSUMUG00000015592	lncRNA gene	Chr7:58429179-58608237 (-)
LP/J	ENSMUSG00230005987	lncRNA gene	Chr7:59635115-59823360 (-)
NOD/ShiLtJ	ENSMUSG00190003858	lncRNA gene	Chr7:49402548-49590783 (-)
NZO/HlLtJ	ENSMUSG00225010194	lncRNA gene	Chr7:57941155-58124898 (-)
PWK/PhJ	ENSLUMG00010002308	lncRNA gene	Chr7:47998256-48177388 (-)
SPRET/EiJ	ENSMSPG00010001617	lncRNA gene	Chr7:48238166-48419986 (-)
WSB/EiJ	ENSIUOG00005005777	lncRNA gene	Chr7:49804315-49980595 (-)

Homology

• Gene Tree
  A230006K03Rik
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  36 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  1
• Transgenic
  1
• Genomic Mutations
  4 involving A230006K03Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  717
• Tissues
  31
• cDNA Data
  9
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  55
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000068151 (Evidence)
• NCBI Gene
  27493

Representative Sequences			Length	Strain/Species
genomic	27493	NCBI Gene Model | MGI Sequence Detail	116667	C57BL/6J
transcript	NR_169189	RefSeq | MGI Sequence Detail	1684	C57BL/6
polypeptide	Q9D6J0	UniProt | EBI | MGI Sequence Detail	193	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 12

  cDNA 9

  Primer pair 3

  
  

  Microarray probesets 4

Other
Accession IDs

MGD-MRK-37483, MGI:108439, MGI:3647906, MGI:5590604

References

• Summaries
  All 55

  Developmental Gene Expression 3

  Diseases 4

  Phenotypes 36
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:390137 Otani Y, et al., Restoration of axon initial segment plasticity via chemogenetic activation rescues autism-related behaviors. Cell Death Dis. 2026 May 19;17(1)

TSS for A230006K03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72719	Chr7:60961427-60961438 (-)	-36 bp
Tssr72718	Chr7:60961410-60961415 (-)	-16 bp
Tssr72717	Chr7:60961388-60961403 (-)	1 bp