Rpl48-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl48-ps1
• Name
  ribosomal protein L48, pseudogene 1
• Synonyms
  Gm4771

• Feature Type
  pseudogene
• IDs
  MGI:3644204
  NCBI Gene: 211619
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:57477489-57478044 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 29.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644204	pseudogene	Chr10:57477349-57478432 (+)
129S1/SvImJ	ENSMUSG00200029004	pseudogene	Chr10:54390876-54391431 (+)
A/J	ENSMUSG00195028307	pseudogene	Chr10:54644754-54645309 (+)
AKR/J	ENSMUSG00220041537	pseudogene	Chr10:54370724-54371279 (+)
BALB/cJ	ENSMUSG00180027718	pseudogene	Chr10:54774141-54774696 (+)
C3H/HeJ	ENSMUSG00175026354	pseudogene	Chr10:54599235-54599790 (+)
C57BL/6NJ	ENSMUSG00215031753	pseudogene	Chr10:54297144-54297699 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009426	pseudogene	Chr10:52171123-52171674 (+)
CAST/EiJ	ENSTCUG00005029870	pseudogene	Chr10:54432358-54432912 (+)
CBA/J	ENSMUSG00210037032	pseudogene	Chr10:54411828-54412383 (+)
DBA/2J	ENSMUSG00185042130	pseudogene	Chr10:54574436-54574991 (+)
FVB/NJ	ENSMUSG00205035312	pseudogene	Chr10:54469462-54470017 (+)
JF1/MsJ	ENSUMUG00000022372	pseudogene	Chr10:54178120-54178679 (+)
LP/J	ENSMUSG00230024033	pseudogene	Chr10:56375539-56376094 (+)
NOD/ShiLtJ	ENSMUSG00190037727	pseudogene	Chr10:54756061-54756616 (+)
NZO/HlLtJ	ENSMUSG00225022791	pseudogene	Chr10:60661654-60662209 (+)
PWK/PhJ	ENSLUMG00010024244	pseudogene	Chr10:54384204-54384759 (+)
SPRET/EiJ	ENSMSPG00010026333	pseudogene	Chr10:56011440-56012011 (+)
WSB/EiJ	ENSIUOG00005043161	pseudogene	Chr10:54415260-54415815 (+)

Homology

• Gene Tree
  Rpl48-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl48-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000093406 (Evidence)
• NCBI Gene
  211619

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093406	Ensembl Gene Model | MGI Sequence Detail	556	C57BL/6J
transcript	ENSMUST00000177147	Ensembl | MGI Sequence Detail	556	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87