Gm6335 Pseudogene Detail

Summary

• Symbol
  Gm6335
• Name
  predicted gene 6335

• Feature Type
  pseudogene
• IDs
  MGI:3644202
  NCBI Gene: 622570
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:111072251-111073444 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 48.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644202	pseudogene	ChrX:111072170-111080465 (+)
129S1/SvImJ	ENSMUSG00200024873	pseudogene	ChrX:92889382-92890575 (+)
A/J	ENSMUSG00195026694	pseudogene	ChrX:96602288-96603481 (+)
AKR/J	ENSMUSG00220040429	pseudogene	ChrX:90849440-90850633 (+)
BALB/cJ	ENSMUSG00180027808	pseudogene	ChrX:93270506-93271699 (+)
C3H/HeJ	ENSMUSG00175028055	pseudogene	ChrX:96875826-96877019 (+)
C57BL/6NJ	ENSMUSG00215014524	pseudogene	ChrX:93510709-93511902 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021079	pseudogene	ChrX:94214356-94215549 (+)
CBA/J	ENSMUSG00210022310	pseudogene	ChrX:93742736-93743929 (+)
DBA/2J	ENSMUSG00185029389	pseudogene	ChrX:106217427-106218620 (+)
FVB/NJ	ENSMUSG00205020569	pseudogene	ChrX:92821830-92823023 (+)
JF1/MsJ	ENSUMUG00000017063	pseudogene	ChrX:126825991-126827306 (+)
LP/J	ENSMUSG00230005504	pseudogene	ChrX:112854761-112855954 (+)
NOD/ShiLtJ	ENSMUSG00190013732	pseudogene	ChrX:92960499-92961692 (+)
NZO/HlLtJ	ENSMUSG00225040733	pseudogene	ChrX:118007845-118009038 (+)
PWK/PhJ	ENSLUMG00010027093	pseudogene	ChrX:92100654-92101847 (+)
SPRET/EiJ	ENSMSPG00010022687	pseudogene	ChrX:96454288-96455441 (+)
WSB/EiJ	ENSIUOG00005015005	pseudogene	ChrX:93317503-93318696 (+)

Homology

• Gene Tree
  Gm6335
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083392 (Evidence)
• NCBI Gene
  622570

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083392	Ensembl Gene Model | MGI Sequence Detail	1194	C57BL/6J
transcript	ENSMUST00000118081	Ensembl | MGI Sequence Detail	1194	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;