Gm5828 Pseudogene Detail

Summary

• Symbol
  Gm5828
• Name
  predicted gene 5828

• Feature Type
  pseudogene
• IDs
  MGI:3644176
  NCBI Gene: 545306
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:16838503-16840362 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 5.11 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  244 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644176	pseudogene	Chr1:16838503-16840362 (-)
129S1/SvImJ	ENSMUSG00200018653	pseudogene	Chr1:14228810-14230669 (-)
A/J	ENSMUSG00195027993	pseudogene	Chr1:14011932-14013791 (-)
AKR/J	ENSMUSG00220008282	pseudogene	Chr1:14070433-14072292 (-)
BALB/cJ	ENSMUSG00180027165	pseudogene	Chr1:14078284-14080143 (-)
C3H/HeJ	ENSMUSG00175000482	pseudogene	Chr1:14004322-14006181 (-)
C57BL/6NJ	ENSMUSG00215011709	pseudogene	Chr1:14052516-14054375 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009944	pseudogene	Chr14:44302849-44316308 (+)
CAST/EiJ	ENSTCUG00005023059	pseudogene	Chr1:14338049-14339909 (-)
CBA/J	ENSMUSG00210002939	pseudogene	Chr1:13870058-13871917 (-)
DBA/2J	ENSMUSG00185004063	pseudogene	Chr1:14934347-14936206 (-)
FVB/NJ	ENSMUSG00205016004	pseudogene	Chr1:14106105-14107964 (-)
JF1/MsJ	ENSUMUG00000025866	pseudogene	Chr1:14208517-14210362 (-)
LP/J	ENSMUSG00230019191	pseudogene	Chr1:14930136-14931995 (-)
NOD/ShiLtJ	ENSMUSG00190034260	pseudogene	Chr1:13979603-13981462 (-)
NZO/HlLtJ	ENSMUSG00225005491	pseudogene	Chr1:18320824-18322683 (-)
PWK/PhJ	ENSLUMG00010023003	pseudogene	Chr1:13791511-13793355 (-)
SPRET/EiJ	ENSMSPG00010028516	pseudogene	Chr1:14620515-14622357 (-)
WSB/EiJ	ENSIUOG00005012538	pseudogene	Chr1:13960031-13961890 (-)

Homology

• Gene Tree
  Gm5828
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  16 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000091020 (Evidence)
• NCBI Gene
  545306

Representative Sequences			Length	Strain/Species
genomic	545306	NCBI Gene Model | MGI Sequence Detail	1860	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5828:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11055	Chr1:16840373-16840383 (-)	-16 bp