Rps10-ps1 Pseudogene Detail

Summary

• Symbol
  Rps10-ps1
• Name
  ribosomal protein S10, pseudogene 1
• Synonyms
  Gm9180

• Feature Type
  pseudogene
• IDs
  MGI:3644167
  NCBI Gene: 668457
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:95529589-95530083 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644167	pseudogene	Chr3:95529553-95530127 (+)
129S1/SvImJ	ENSMUSG00200045379	pseudogene	Chr3:92188075-92188569 (+)
A/J	ENSMUSG00195049001	pseudogene	Chr3:92512457-92512951 (+)
AKR/J	ENSMUSG00220042478	pseudogene	Chr3:90899515-90900009 (+)
BALB/cJ	ENSMUSG00180042667	pseudogene	Chr3:92511875-92512369 (+)
C3H/HeJ	ENSMUSG00175034467	pseudogene	Chr3:92156130-92156624 (+)
C57BL/6NJ	ENSMUSG00215036807	pseudogene	Chr3:92874949-92875443 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048940	pseudogene	Chr3:92706173-92706667 (+)
CBA/J	ENSMUSG00210051621	pseudogene	Chr3:92693590-92694084 (+)
DBA/2J	ENSMUSG00185045326	pseudogene	Chr3:93110202-93110696 (+)
FVB/NJ	ENSMUSG00205051346	pseudogene	Chr3:91806857-91807351 (+)
JF1/MsJ	ENSUMUG00000054491	pseudogene	Chr3:92000202-92000696 (+)
LP/J	ENSMUSG00230045248	pseudogene	Chr3:95051519-95052013 (+)
NOD/ShiLtJ	ENSMUSG00190047082	pseudogene	Chr3:93209744-93210238 (+)
NZO/HlLtJ	ENSMUSG00225012414	pseudogene	Chr3:97473683-97474177 (+)
PWK/PhJ	ENSLUMG00010052614	pseudogene	Chr3:91980402-91980896 (+)
SPRET/EiJ	ENSMSPG00010047118	pseudogene	Chr4:125965911-125966405 (-)
SPRET/EiJ	ENSMSPG00010045984	pseudogene	Chr3:92280173-92280665 (+)
SPRET/EiJ	ENSMSPG00010010259	pseudogene	Chr13:94773141-94773635 (-)
WSB/EiJ	ENSIUOG00005031944	pseudogene	Chr3:92629772-92630266 (+)

Homology

• Gene Tree
  Rps10-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving Rps10-ps1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000060438 (Evidence)
• NCBI Gene
  668457

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060438	Ensembl Gene Model | MGI Sequence Detail	495	C57BL/6J
transcript	ENSMUST00000074353	Ensembl | MGI Sequence Detail	495	Not Applicable

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 7
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Rps10-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30607	Chr3:95529547-95529558 (+)	-36 bp
Tssr30608	Chr3:95529947-95529979 (+)	374 bp