Gm6551 Gene Detail

Summary

• Symbol
  Gm6551
• Name
  predicted gene 6551

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3644103
  NCBI Gene: 625060
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:20747719-20748603 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 12.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644103	protein coding gene	Chr16:20747364-20748837 (+)
129S1/SvImJ	ENSMUSG00200047687	pseudogene	Chr16:17745206-17746090 (+)
A/J	ENSMUSG00195035831	pseudogene	Chr16:17303428-17304312 (+)
AKR/J	ENSMUSG00220046495	pseudogene	Chr16:17622857-17623741 (+)
BALB/cJ	ENSMUSG00180042924	pseudogene	Chr16:17544037-17544921 (+)
C3H/HeJ	ENSMUSG00175051620	pseudogene	Chr16:17689096-17689980 (+)
C57BL/6NJ	ENSMUSG00215041852	pseudogene	Chr16:17416242-17417126 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046590	pseudogene	Chr16:18014958-18015842 (+)
CBA/J	ENSMUSG00210048534	pseudogene	Chr16:17710827-17711711 (+)
DBA/2J	ENSMUSG00185036272	pseudogene	Chr16:17649573-17650457 (+)
FVB/NJ	ENSMUSG00205047567	pseudogene	Chr16:17649558-17650442 (+)
JF1/MsJ	ENSUMUG00000053598	pseudogene	Chr16:17835171-17836055 (+)
LP/J	ENSMUSG00230034047	pseudogene	Chr16:20228823-20229707 (+)
NOD/ShiLtJ	ENSMUSG00190050794	pseudogene	Chr16:17791090-17791974 (+)
NZO/HlLtJ	ENSMUSG00225039231	pseudogene	Chr16:23479885-23480769 (+)
PWK/PhJ	ENSLUMG00010050536	pseudogene	Chr16:17661625-17662509 (+)
SPRET/EiJ	ENSMSPG00010047545	pseudogene	Chr16:17519953-17520837 (+)
WSB/EiJ	ENSIUOG00005044980	pseudogene	Chr16:17893940-17894824 (+)

Homology

• Gene Tree
  Gm6551
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000116659 (Evidence)
• NCBI Gene
  625060

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116659	Ensembl Gene Model | MGI Sequence Detail	885	C57BL/6J
transcript	ENSMUST00000232604	Ensembl | MGI Sequence Detail	885	Not Applicable
polypeptide	NP_001357823	RefSeq | MGI Sequence Detail	294	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for Gm6551:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4814	Chr16:20747632-20747646 (+)	-80 bp