Gm5871 Pseudogene Detail

Summary

• Symbol
  Gm5871
• Name
  predicted gene 5871

• Feature Type
  pseudogene
• IDs
  MGI:3644058
  NCBI Gene: 545792
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:109164064-109164781 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644058	pseudogene	Chr5:109164064-109164834 (-)
129S1/SvImJ	ENSMUSG00200024030	pseudogene	Chr5:102938310-102939027 (-)
A/J	ENSMUSG00195041521	pseudogene	Chr5:102381172-102381889 (-)
AKR/J	ENSMUSG00220052199	pseudogene	Chr5:101946288-101947005 (-)
BALB/cJ	ENSMUSG00180048941	pseudogene	Chr5:102534004-102534721 (-)
C3H/HeJ	ENSMUSG00175048856	pseudogene	Chr5:104583183-104583900 (-)
C57BL/6NJ	ENSMUSG00215038226	pseudogene	Chr5:102567080-102567797 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010306	pseudogene	Chr19:49878688-49887580 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210046257	pseudogene	Chr5:103340768-103341485 (-)
DBA/2J	ENSMUSG00185048489	pseudogene	Chr5:106238795-106239512 (-)
FVB/NJ	ENSMUSG00205052448	pseudogene	Chr5:102267217-102267934 (-)
JF1/MsJ	ENSUMUG00000018047	pseudogene	Chr5:109206487-109207205 (-)
LP/J	ENSMUSG00230032576	pseudogene	Chr5:110479369-110480086 (-)
NOD/ShiLtJ	ENSMUSG00190050887	pseudogene	Chr5:102247670-102248387 (-)
NZO/HlLtJ	ENSMUSG00225026501	pseudogene	Chr5:118101214-118101931 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010047960	pseudogene	Chr5:104355241-104355975 (-)
WSB/EiJ	ENSIUOG00005046463	pseudogene	Chr5:104968812-104969529 (-)

Homology

• Gene Tree
  Gm5871
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5871
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000093545 (Evidence)
• NCBI Gene
  545792

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093545	Ensembl Gene Model | MGI Sequence Detail	718	C57BL/6J
transcript	ENSMUST00000176461	Ensembl | MGI Sequence Detail	718	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm5871:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52467	Chr5:109164788-109164807 (-)	-17 bp