Gm5690 Pseudogene Detail

Summary

• Symbol
  Gm5690
• Name
  predicted gene 5690

• Feature Type
  pseudogene
• IDs
  MGI:3644035
  NCBI Gene: 435570
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:74373961-74374595 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 50.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644035	pseudogene	Chr18:74373929-74374623 (+)
129S1/SvImJ	ENSMUSG00200030661	pseudogene	Chr18:71598852-71599486 (+)
A/J	ENSMUSG00195005068	pseudogene	Chr18:71645482-71646116 (+)
AKR/J	ENSMUSG00220017825	pseudogene	Chr18:71588308-71588942 (+)
BALB/cJ	ENSMUSG00180013530	pseudogene	Chr18:72224197-72224831 (+)
C3H/HeJ	ENSMUSG00175013776	pseudogene	Chr18:71792297-71792931 (+)
C57BL/6NJ	ENSMUSG00215030240	pseudogene	Chr18:71136869-71137503 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028861	pseudogene	Chr18:70712424-70713058 (+)
CBA/J	ENSMUSG00210035807	pseudogene	Chr18:71749808-71750442 (+)
DBA/2J	ENSMUSG00185012050	pseudogene	Chr18:71655958-71656592 (+)
FVB/NJ	ENSMUSG00205018368	pseudogene	Chr18:71267387-71268021 (+)
JF1/MsJ	ENSUMUG00000036917	pseudogene	Chr18:71560818-71561452 (+)
LP/J	ENSMUSG00230014160	pseudogene	Chr18:73723027-73723661 (+)
NOD/ShiLtJ	ENSMUSG00190023739	pseudogene	Chr18:71391031-71391665 (+)
NZO/HlLtJ	ENSMUSG00225034875	pseudogene	Chr18:73572530-73573164 (+)
PWK/PhJ	ENSLUMG00010007156	pseudogene	Chr18:71983610-71984244 (+)
SPRET/EiJ	ENSMSPG00010010040	pseudogene	Chr18:72222047-72222681 (+)
WSB/EiJ	ENSIUOG00005008214	pseudogene	Chr18:71198007-71198641 (+)

Homology

• Gene Tree
  Gm5690
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm5690
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000118151 (Evidence)
• NCBI Gene
  435570

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118151	Ensembl Gene Model | MGI Sequence Detail	635	C57BL/6J
transcript	ENSMUST00000238110	Ensembl | MGI Sequence Detail	635	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;

TSS for Gm5690:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151904	Chr18:74373928-74373938 (+)	-28 bp