Gm5501 Pseudogene Detail

Summary

• Symbol
  Gm5501
• Name
  predicted gene 5501

• Feature Type
  pseudogene
• IDs
  MGI:3644023
  NCBI Gene: 433161
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:9916927-9917758 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 4.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644023	pseudogene	Chr18:9916925-9917758 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195008962	pseudogene	Chr18:7026671-7027502 (+)
AKR/J	ENSMUSG00220019982	pseudogene	Chr18:7017842-7018673 (+)
BALB/cJ	ENSMUSG00180005558	pseudogene	Chr18:7473819-7474650 (+)
C3H/HeJ	ENSMUSG00175008160	pseudogene	Chr18:7009179-7010010 (+)
C57BL/6NJ	ENSMUSG00215023481	pseudogene	Chr18:6753467-6754298 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210022041	pseudogene	Chr18:7022068-7022899 (+)
DBA/2J	ENSMUSG00185031947	pseudogene	Chr18:7031775-7032606 (+)
FVB/NJ	ENSMUSG00205036767	pseudogene	Chr18:6810964-6811795 (+)
JF1/MsJ	ENSUMUG00000042892	pseudogene	Chr18:7110266-7111117 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190010563	pseudogene	Chr18:6804577-6805408 (+)
NZO/HlLtJ	ENSMUSG00225034317	pseudogene	Chr18:9015244-9016075 (+)
PWK/PhJ	ENSLUMG00010010341	pseudogene	Chr18:7298997-7299849 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005027685	pseudogene	Chr18:6882940-6883771 (+)

Homology

• Gene Tree
  Gm5501
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000092039 (Evidence)
• NCBI Gene
  433161

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092039	Ensembl Gene Model | MGI Sequence Detail	832	C57BL/6J
transcript	ENSMUST00000165917	Ensembl | MGI Sequence Detail	832	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14