Gm5001 Pseudogene Detail

Summary

• Symbol
  Gm5001
• Name
  predicted gene 5001

• Feature Type
  pseudogene
• IDs
  MGI:3643923
  NCBI Gene: 257772
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:62906130-62906460 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 29.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643923	pseudogene	Chr6:62906081-62906460 (+)
129S1/SvImJ	ENSMUSG00200006588	pseudogene	Chr6:59851119-59851449 (+)
A/J	ENSMUSG00195035144	pseudogene	Chr6:59567619-59567950 (+)
AKR/J	ENSMUSG00220006215	pseudogene	Chr6:59048452-59048782 (+)
BALB/cJ	ENSMUSG00180010291	pseudogene	Chr6:59923772-59924102 (+)
C3H/HeJ	ENSMUSG00175039620	pseudogene	Chr6:59609501-59609831 (+)
C57BL/6NJ	ENSMUSG00215028408	pseudogene	Chr6:59903352-59903682 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037393	pseudogene	Chr6:57441425-57441750 (+)
CAST/EiJ	ENSTCUG00005040311	pseudogene	Chr6:60207695-60208024 (+)
CBA/J	ENSMUSG00210033931	pseudogene	Chr6:59722916-59723246 (+)
DBA/2J	ENSMUSG00185020045	pseudogene	Chr6:60304521-60304851 (+)
FVB/NJ	ENSMUSG00205033005	pseudogene	Chr6:59725687-59726017 (+)
JF1/MsJ	ENSUMUG00000037333	pseudogene	Chr6:59597622-59597952 (+)
LP/J	ENSMUSG00230025737	pseudogene	Chr6:61406785-61407115 (+)
NOD/ShiLtJ	ENSMUSG00190008821	pseudogene	Chr6:59591178-59591508 (+)
NZO/HlLtJ	ENSMUSG00225021888	pseudogene	Chr6:63398133-63398463 (+)
PWK/PhJ	ENSLUMG00010018817	pseudogene	Chr6:58830644-58830974 (+)
SPRET/EiJ	ENSMSPG00010026172	pseudogene	Chr6:60516694-60517024 (+)
WSB/EiJ	ENSIUOG00005020527	pseudogene	Chr6:60387672-60388002 (+)

Homology

• Gene Tree
  Gm5001
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000107854 (Evidence)
• NCBI Gene
  257772

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107854	Ensembl Gene Model | MGI Sequence Detail	331	C57BL/6J
transcript	ENSMUST00000204361	Ensembl | MGI Sequence Detail	331	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;