Gm5425 Pseudogene Detail

Summary

• Symbol
  Gm5425
• Name
  predicted gene 5425

• Feature Type
  pseudogene
• IDs
  MGI:3643901
  NCBI Gene: 432482
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:84144750-84145208 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 41.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643901	pseudogene	Chr10:84144735-84145220 (+)
129S1/SvImJ	ENSMUSG00200050719	pseudogene	Chr10:80635405-80635863 (+)
A/J	ENSMUSG00195050771	pseudogene	Chr10:81070071-81070529 (+)
AKR/J	ENSMUSG00220049835	pseudogene	Chr10:80679625-80680083 (+)
BALB/cJ	ENSMUSG00180053499	pseudogene	Chr10:81080366-81080824 (+)
C3H/HeJ	ENSMUSG00175052708	pseudogene	Chr10:80956350-80956808 (+)
C57BL/6NJ	ENSMUSG00215053080	pseudogene	Chr10:80632619-80633077 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052079	pseudogene	Chr10:80404328-80404779 (+)
CBA/J	ENSMUSG00210050267	pseudogene	Chr10:80807074-80807532 (+)
DBA/2J	ENSMUSG00185053769	pseudogene	Chr10:81016591-81017049 (+)
FVB/NJ	ENSMUSG00205052116	pseudogene	Chr10:80734176-80734634 (+)
JF1/MsJ	ENSUMUG00000027991	pseudogene	Chr10:82388557-82389015 (+)
JF1/MsJ	ENSUMUG00000032602	pseudogene	Chr4:35690081-35690539 (-)
LP/J	ENSMUSG00230018728	pseudogene	Chr10:82918908-82919366 (+)
NOD/ShiLtJ	ENSMUSG00190052982	pseudogene	Chr10:81063083-81063541 (+)
NZO/HlLtJ	ENSMUSG00225052879	pseudogene	Chr10:87192221-87192679 (+)
PWK/PhJ	ENSLUMG00010052467	pseudogene	Chr10:80691811-80692269 (+)
SPRET/EiJ	ENSMSPG00010033161	pseudogene	Chr10:82110045-82110503 (+)
WSB/EiJ	ENSIUOG00005051797	pseudogene	Chr10:80752508-80752966 (+)

Homology

• Gene Tree
  Gm5425
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5425
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000111875 (Evidence)
• NCBI Gene
  432482

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111875	Ensembl Gene Model | MGI Sequence Detail	459	C57BL/6J
transcript	ENSMUST00000214125	Ensembl | MGI Sequence Detail	459	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm5425:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94886	Chr10:84144688-84144707 (+)	-52 bp
Tssr94887	Chr10:84144711-84144722 (+)	-33 bp