Gm4916 Pseudogene Detail

Summary

• Symbol
  Gm4916
• Name
  predicted gene 4916

• Feature Type
  pseudogene
• IDs
  MGI:3643896
  NCBI Gene: 237030
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:127276143-127276784 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 50.61 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643896	pseudogene	ChrX:127276143-127277776 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039774	pseudogene	ChrX:125416545-125417186 (+)
A/J	MGP_AJ_G0039770	pseudogene	ChrX:124837148-124837789 (+)
AKR/J	MGP_AKRJ_G0039697	pseudogene	ChrX:128885518-128886159 (+)
BALB/cJ	MGP_BALBcJ_G0039742	pseudogene	ChrX:123335322-123335963 (+)
C3H/HeJ	MGP_C3HHeJ_G0039400	pseudogene	ChrX:125528545-125529186 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040302	pseudogene	ChrX:129093999-129094640 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036926	pseudogene	ChrX:117441267-117441908 (+)
CAST/EiJ	MGP_CASTEiJ_G0038518	pseudogene	ChrX:106555719-106556360 (+)
CBA/J	MGP_CBAJ_G0039373	pseudogene	ChrX:132907414-132908055 (+)
DBA/2J	MGP_DBA2J_G0039568	pseudogene	ChrX:124260516-124261157 (+)
FVB/NJ	MGP_FVBNJ_G0039526	pseudogene	ChrX:123568022-123568663 (+)
LP/J	MGP_LPJ_G0039609	pseudogene	ChrX:126248029-126248670 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039529	pseudogene	ChrX:139678456-139679097 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040409	pseudogene	ChrX:124869793-124870434 (+)
PWK/PhJ	MGP_PWKPhJ_G0038196	pseudogene	ChrX:103583481-103584122 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037940	pseudogene	ChrX:107019314-107019955 (+)
WSB/EiJ	MGP_WSBEiJ_G0038751	pseudogene	ChrX:123380946-123381587 (+)

Homology

• Gene Tree
  Gm4916
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085722 (Evidence)
• NCBI Gene
  237030

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085722	Ensembl Gene Model | MGI Sequence Detail	642	C57BL/6J
transcript	ENSMUST00000126139	Ensembl | MGI Sequence Detail	642	Not Applicable
polypeptide	A9Z056	UniProt | EBI | MGI Sequence Detail	354	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm4916:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161934	ChrX:127276127-127276139 (+)	-10 bp