Gm8225 Pseudogene Detail

Summary

• Symbol
  Gm8225
• Name
  predicted gene 8225

• Feature Type
  pseudogene
• IDs
  MGI:3643826
  NCBI Gene: 666668
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:26761734-26762689 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643826	pseudogene	Chr17:26761719-26762726 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0023402	protein coding gene	Chr17:25726490-25727549 (+)
A/J	MGP_AJ_G0023361	protein coding gene	Chr17:24935267-24936267 (+)
AKR/J	MGP_AKRJ_G0023327	protein coding gene	Chr17:25063885-25064811 (+)
BALB/cJ	MGP_BALBcJ_G0023366	protein coding gene	Chr17:25183258-25184070 (+)
C3H/HeJ	MGP_C3HHeJ_G0023126	protein coding gene	Chr17:25455732-25457879 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0023806	protein coding gene	Chr17:26775244-26777981 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0023101	protein coding gene	Chr17:27756719-27760870 (+)
DBA/2J	MGP_DBA2J_G0023231	protein coding gene	Chr17:24526064-24526972 (+)
FVB/NJ	MGP_FVBNJ_G0023201	protein coding gene	Chr17:24303315-24304698 (+)
LP/J	MGP_LPJ_G0023308	protein coding gene	Chr17:25993777-25995487 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023220	protein coding gene	Chr17:27282296-27283705 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023848	protein coding gene	Chr17:25411141-25412075 (+)
PWK/PhJ	MGP_PWKPhJ_G0017225	protein coding gene	Chr11:29180580-29181430 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0017019	protein coding gene	Chr11:29974292-29978034 (+)
WSB/EiJ	MGP_WSBEiJ_G0017495	protein coding gene	Chr11:29920062-29920797 (+)

Homology

• Gene Tree
  Gm8225
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Radiation induced
  2
• Targeted
  1
• Genomic Mutations
  2 involving Gm8225
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000068604 (Evidence)
• NCBI Gene
  666668

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000068604	Ensembl Gene Model | MGI Sequence Detail	956	C57BL/6J
transcript	ENSMUST00000090257	Ensembl | MGI Sequence Detail	879	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044