Gm8225 Pseudogene Detail

Summary

• Symbol
  Gm8225
• Name
  predicted gene 8225

• Feature Type
  pseudogene
• IDs
  MGI:3643826
  NCBI Gene: 666668
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:26761734-26762689 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643826	pseudogene	Chr17:26761719-26762726 (+)
129S1/SvImJ	ENSMUSG00200053991	pseudogene	Chr17:22206996-22207951 (+)
A/J	ENSMUSG00195054551	pseudogene	Chr17:23227620-23228575 (+)
AKR/J	ENSMUSG00220053795	pseudogene	Chr17:22270988-22271943 (+)
BALB/cJ	ENSMUSG00180052288	pseudogene	Chr17:22505084-22506039 (+)
C3H/HeJ	ENSMUSG00175053691	pseudogene	Chr17:22263251-22264206 (+)
C57BL/6NJ	ENSMUSG00215054425	pseudogene	Chr17:22271382-22272337 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051252	pseudogene	Chr17:22866639-22867600 (+)
CBA/J	ENSMUSG00210051474	pseudogene	Chr17:22102106-22103061 (+)
DBA/2J	ENSMUSG00185053671	pseudogene	Chr17:24315787-24316742 (+)
FVB/NJ	ENSMUSG00205053301	pseudogene	Chr17:22574407-22575362 (+)
JF1/MsJ	ENSUMUG00000058002	pseudogene	Chr17:23769292-23770253 (+)
LP/J	ENSMUSG00230055092	pseudogene	Chr17:25711505-25712460 (+)
NOD/ShiLtJ	ENSMUSG00190054457	pseudogene	Chr17:22204635-22205590 (+)
NZO/HlLtJ	ENSMUSG00225054412	pseudogene	Chr17:27634868-27635823 (+)
PWK/PhJ	ENSLUMG00010053535	pseudogene	Chr17:21685363-21686324 (+)
SPRET/EiJ	ENSMSPG00010050698	pseudogene	Chr17:23008147-23009109 (+)
WSB/EiJ	ENSIUOG00005051620	pseudogene	Chr17:22961641-22962596 (+)

Homology

• Gene Tree
  Gm8225
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Radiation induced
  2
• Targeted
  1
• Genomic Mutations
  2 involving Gm8225
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000068604 (Evidence)
• NCBI Gene
  666668

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000068604	Ensembl Gene Model | MGI Sequence Detail	956	C57BL/6J
transcript	ENSMUST00000090257	Ensembl | MGI Sequence Detail	879	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044