Gm5619 Pseudogene Detail

Summary

• Symbol
  Gm5619
• Name
  predicted gene 5619

• Feature Type
  pseudogene
• IDs
  MGI:3643807
  NCBI Gene: 434426
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:85663921-85664680 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 46.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643807	pseudogene	Chr9:85663871-85664734 (-)
129S1/SvImJ	ENSMUSG00200005683	pseudogene	Chr9:82769041-82769788 (-)
A/J	ENSMUSG00195007393	pseudogene	Chr9:82566949-82567702 (-)
AKR/J	ENSMUSG00220020044	pseudogene	Chr9:82694463-82695222 (-)
BALB/cJ	ENSMUSG00180007281	pseudogene	Chr9:82671657-82672410 (-)
C3H/HeJ	ENSMUSG00175004858	pseudogene	Chr9:82731714-82732467 (-)
C57BL/6NJ	ENSMUSG00215009981	pseudogene	Chr9:82670334-82671093 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210006094	pseudogene	Chr9:82789026-82789785 (-)
DBA/2J	ENSMUSG00185001867	pseudogene	Chr9:82799682-82800435 (-)
FVB/NJ	ENSMUSG00205005345	pseudogene	Chr9:82979920-82980673 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230010015	pseudogene	Chr9:82904506-82905253 (-)
NOD/ShiLtJ	ENSMUSG00190011570	pseudogene	Chr9:82865528-82866287 (-)
NZO/HlLtJ	ENSMUSG00225016905	pseudogene	Chr9:83100663-83101416 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005003971	pseudogene	Chr9:82259982-82260735 (-)

Homology

• Gene Tree
  Gm5619
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5619
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000099980 (Evidence)
• NCBI Gene
  434426

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099980	Ensembl Gene Model | MGI Sequence Detail	760	C57BL/6J
transcript	ENSMUST00000071172	Ensembl | MGI Sequence Detail	760	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;