Gm5499 Pseudogene Detail

Summary

• Symbol
  Gm5499
• Name
  predicted pseudogene 5499

• Feature Type
  pseudogene
• IDs
  MGI:3643804
  NCBI Gene: 433144
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:87385699-87386583 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 56.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643804	pseudogene	Chr17:87385688-87387658 (+)
129S1/SvImJ	ENSMUSG00200022772	pseudogene	Chr17:82792027-82792911 (+)
A/J	ENSMUSG00195029242	pseudogene	Chr17:84170276-84171160 (+)
AKR/J	ENSMUSG00220016338	pseudogene	Chr17:83124309-83125193 (+)
BALB/cJ	ENSMUSG00180029243	pseudogene	Chr17:83842403-83843287 (+)
C3H/HeJ	ENSMUSG00175006947	pseudogene	Chr17:83108293-83109177 (+)
C57BL/6NJ	ENSMUSG00215020075	pseudogene	Chr17:82829163-82830047 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010516	pseudogene	Chr2:78883027-78888732 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210022478	pseudogene	Chr17:82967003-82967887 (+)
DBA/2J	ENSMUSG00185020848	pseudogene	Chr17:85787037-85787921 (+)
FVB/NJ	ENSMUSG00205006182	pseudogene	Chr17:83599238-83600122 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230010833	pseudogene	Chr17:86814767-86815651 (+)
NOD/ShiLtJ	ENSMUSG00190009587	pseudogene	Chr17:82868391-82869275 (+)
NZO/HlLtJ	ENSMUSG00225031322	pseudogene	Chr17:89079608-89080492 (+)
PWK/PhJ	ENSLUMG00010034234	pseudogene	Chr17:82731552-82732436 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005023228	pseudogene	Chr17:83791927-83792811 (+)

Homology

• Gene Tree
  Gm5499
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000071035 (Evidence)
• NCBI Gene
  433144

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000071035	Ensembl Gene Model | MGI Sequence Detail	885	C57BL/6J
transcript	ENSMUST00000090731	Ensembl | MGI Sequence Detail	885	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5499:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146173	Chr17:87385683-87385695 (+)	-10 bp