Gm5312 Pseudogene Detail

Summary

• Symbol
  Gm5312
• Name
  predicted gene 5312

• Feature Type
  pseudogene
• IDs
  MGI:3643752
  NCBI Gene: 384450
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:83818664-83819210 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 36.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643752	pseudogene	Chr6:83818631-83819253 (+)
129S1/SvImJ	ENSMUSG00200012634	pseudogene	Chr6:80787761-80788307 (+)
A/J	ENSMUSG00195012384	pseudogene	Chr6:80466656-80467202 (+)
AKR/J	ENSMUSG00220002255	pseudogene	Chr6:79416582-79417128 (+)
BALB/cJ	ENSMUSG00180010162	pseudogene	Chr6:80842699-80843245 (+)
C3H/HeJ	ENSMUSG00175043792	pseudogene	Chr6:96568563-96569109 (-)
C57BL/6NJ	ENSMUSG00215016393	pseudogene	Chr6:80838421-80838967 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008328	pseudogene	Chr6:80844873-80845419 (+)
CBA/J	ENSMUSG00210011294	pseudogene	Chr6:80656639-80657185 (+)
DBA/2J	ENSMUSG00185044338	pseudogene	Chr6:81203794-81204340 (+)
FVB/NJ	ENSMUSG00205026607	pseudogene	Chr6:79884326-79884872 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230050716	pseudogene	Chr6:82344977-82345523 (+)
NOD/ShiLtJ	ENSMUSG00190001858	pseudogene	Chr6:80287419-80287965 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010044498	pseudogene	Chr6:81740839-81741385 (+)
WSB/EiJ	ENSIUOG00005018656	pseudogene	Chr6:81221744-81222290 (+)

Homology

• Gene Tree
  Gm5312
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm5312
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000108107 (Evidence)
• NCBI Gene
  384450

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108107	Ensembl Gene Model | MGI Sequence Detail	547	C57BL/6J
transcript	ENSMUST00000203728	Ensembl | MGI Sequence Detail	547	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Gm5312:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57383	Chr6:83818625-83818631 (+)	-36 bp