Rpl31-ps15 Pseudogene Detail

Summary

• Symbol
  Rpl31-ps15
• Name
  ribosomal protein L31, pseudogene 15
• Synonyms
  Gm6670

• Feature Type
  pseudogene
• IDs
  MGI:3643738
  NCBI Gene: 626367
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:37788879-37789253 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 18.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  52 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643738	pseudogene	Chr3:37788824-37789286 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012104	pseudogene	Chr3:35604853-35605223 (+)
A/J	MGP_AJ_G0012097	pseudogene	Chr3:34881603-34881977 (+)
AKR/J	MGP_AKRJ_G0012059	pseudogene	Chr3:35552746-35553116 (+)
BALB/cJ	MGP_BALBcJ_G0012074	pseudogene	Chr3:34635935-34636309 (+)
C3H/HeJ	MGP_C3HHeJ_G0011951	pseudogene	Chr3:35590009-35590383 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012380	pseudogene	Chr3:37239191-37240994 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010814	pseudogene	Chr3:32574688-32575069 (+)
CAST/EiJ	MGP_CASTEiJ_G0011733	pseudogene	Chr3:35486432-35487351 (+)
CBA/J	MGP_CBAJ_G0011924	pseudogene	Chr3:38251194-38251568 (+)
DBA/2J	MGP_DBA2J_G0011979	pseudogene	Chr3:34326343-34326713 (+)
FVB/NJ	MGP_FVBNJ_G0011986	pseudogene	Chr3:33764891-33765265 (+)
LP/J	MGP_LPJ_G0012051	pseudogene	Chr3:36390966-36391336 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011988	pseudogene	Chr3:40733926-40734296 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012389	pseudogene	Chr3:35390363-35390733 (+)
PWK/PhJ	MGP_PWKPhJ_G0011577	pseudogene	Chr3:34016028-34016714 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011392	pseudogene	Chr3:34763435-34763809 (+)
WSB/EiJ	MGP_WSBEiJ_G0011756	pseudogene	Chr3:35412871-35413245 (+)

Homology

• Gene Tree
  Rpl31-ps15
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Rpl31-ps15
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000097304 (Evidence)
• NCBI Gene
  626367

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097304	Ensembl Gene Model | MGI Sequence Detail	375	C57BL/6J
transcript	ENSMUST00000181857	Ensembl | MGI Sequence Detail	375	Not Applicable

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Rpl31-ps15:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28924	Chr3:37788849-37788861 (+)	-24 bp