Rpl31-ps15 Pseudogene Detail

Summary

• Symbol
  Rpl31-ps15
• Name
  ribosomal protein L31, pseudogene 15
• Synonyms
  Gm6670

• Feature Type
  pseudogene
• IDs
  MGI:3643738
  NCBI Gene: 626367
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:37788879-37789253 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 18.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643738	pseudogene	Chr3:37788824-37789286 (+)
129S1/SvImJ	ENSMUSG00200007033	pseudogene	Chr3:34534400-34534770 (+)
A/J	ENSMUSG00195001428	pseudogene	Chr3:34498131-34498505 (+)
AKR/J	ENSMUSG00220000748	pseudogene	Chr3:34564993-34565363 (+)
BALB/cJ	ENSMUSG00180002659	pseudogene	Chr3:34643965-34644339 (+)
C3H/HeJ	ENSMUSG00175003964	pseudogene	Chr3:34530544-34530918 (+)
C57BL/6NJ	ENSMUSG00215001531	pseudogene	Chr3:34918036-34918410 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010814	pseudogene	Chr3:32574688-32575069 (+)
CAST/EiJ	ENSTCUG00005001179	pseudogene	Chr3:34380192-34380569 (+)
CBA/J	ENSMUSG00210002058	pseudogene	Chr3:34585645-34586019 (+)
DBA/2J	ENSMUSG00185001816	pseudogene	Chr3:34790851-34791221 (+)
FVB/NJ	ENSMUSG00205000702	pseudogene	Chr3:33962314-33962688 (+)
JF1/MsJ	ENSUMUG00000000781	pseudogene	Chr3:34330982-34331356 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190002010	pseudogene	Chr3:34832135-34832505 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010000794	pseudogene	Chr3:34375344-34375718 (+)
SPRET/EiJ	ENSMSPG00010000694	pseudogene	Chr3:34773780-34774154 (+)
WSB/EiJ	ENSIUOG00005014482	pseudogene	Chr3:34833400-34833774 (+)

Homology

• Gene Tree
  Rpl31-ps15
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Rpl31-ps15
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000097304 (Evidence)
• NCBI Gene
  626367

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097304	Ensembl Gene Model | MGI Sequence Detail	375	C57BL/6J
transcript	ENSMUST00000181857	Ensembl | MGI Sequence Detail	375	Not Applicable

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Rpl31-ps15:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28924	Chr3:37788849-37788861 (+)	-24 bp