Gm8838 Pseudogene Detail

Summary

• Symbol
  Gm8838
• Name
  predicted gene 8838

• Feature Type
  pseudogene
• IDs
  MGI:3643717
  NCBI Gene: 667837
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:106230038-106230578 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 53.04 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643717	pseudogene	Chr8:106229831-106230716 (+)
129S1/SvImJ	ENSMUSG00200015215	pseudogene	Chr8:100509613-100510153 (+)
A/J	ENSMUSG00195004326	pseudogene	Chr8:100832092-100832632 (+)
AKR/J	ENSMUSG00220015248	pseudogene	Chr8:100965998-100966538 (+)
BALB/cJ	ENSMUSG00180024971	pseudogene	Chr8:100837884-100838424 (+)
C3H/HeJ	ENSMUSG00175025718	pseudogene	Chr8:100894624-100895164 (+)
C57BL/6NJ	ENSMUSG00215038129	pseudogene	Chr8:100508973-100509513 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023772	pseudogene	Chr8:100274001-100274541 (+)
CBA/J	ENSMUSG00210035707	pseudogene	Chr8:100822329-100822869 (+)
DBA/2J	ENSMUSG00185005869	pseudogene	Chr8:106931115-106931655 (+)
FVB/NJ	ENSMUSG00205017663	pseudogene	Chr8:99806611-99807151 (+)
JF1/MsJ	ENSUMUG00000015234	pseudogene	Chr8:109264309-109264847 (+)
LP/J	ENSMUSG00230035701	pseudogene	Chr8:110611505-110612045 (+)
NOD/ShiLtJ	ENSMUSG00190029414	pseudogene	Chr8:100961523-100962063 (+)
NZO/HlLtJ	ENSMUSG00225022815	pseudogene	Chr8:113962041-113962581 (+)
PWK/PhJ	ENSLUMG00010004464	pseudogene	Chr8:100745362-100745901 (+)
SPRET/EiJ	ENSMSPG00010041454	pseudogene	Chr8:102825015-102825556 (+)
WSB/EiJ	ENSIUOG00005032925	pseudogene	Chr8:101634042-101634582 (+)

Homology

• Gene Tree
  Gm8838
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000110608 (Evidence)
• NCBI Gene
  667837

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110608	Ensembl Gene Model | MGI Sequence Detail	541	C57BL/6J
transcript	ENSMUST00000212978	Ensembl | MGI Sequence Detail	541	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8838:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79149	Chr8:106229830-106229834 (+)	-206 bp