Gm6517 Pseudogene Detail

Summary

• Symbol
  Gm6517
• Name
  predicted gene 6517

• Feature Type
  pseudogene
• IDs
  MGI:3643656
  NCBI Gene: 624662
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:67047709-67048219 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 35.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643656	pseudogene	Chr5:67047543-67053910 (+)
129S1/SvImJ	ENSMUSG00200036323	pseudogene	Chr5:62681468-62681978 (+)
A/J	ENSMUSG00195036114	pseudogene	Chr5:62041849-62042359 (+)
AKR/J	ENSMUSG00220004553	pseudogene	Chr5:62179819-62180329 (+)
BALB/cJ	ENSMUSG00180023270	pseudogene	Chr5:61834713-61835223 (+)
C3H/HeJ	ENSMUSG00175029595	pseudogene	Chr5:63862180-63862690 (+)
C57BL/6NJ	ENSMUSG00215006617	pseudogene	Chr5:62595051-62595561 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011627	pseudogene	Chr5:60214478-60214983 (+)
CAST/EiJ	ENSTCUG00005033768	pseudogene	Chr5:61756154-61756664 (+)
CBA/J	ENSMUSG00210023990	pseudogene	Chr5:62775050-62775561 (+)
DBA/2J	ENSMUSG00185005895	pseudogene	Chr5:64632598-64633108 (+)
FVB/NJ	ENSMUSG00205011531	pseudogene	Chr5:61582083-61582594 (+)
JF1/MsJ	ENSUMUG00000022720	pseudogene	Chr5:69129468-69129980 (+)
LP/J	ENSMUSG00230009679	pseudogene	Chr5:69294084-69294594 (+)
NOD/ShiLtJ	ENSMUSG00190004311	pseudogene	Chr5:61766643-61767153 (+)
NZO/HlLtJ	ENSMUSG00225011032	pseudogene	Chr5:74406569-74407079 (+)
PWK/PhJ	ENSLUMG00010014315	pseudogene	Chr5:61747551-61748063 (+)
SPRET/EiJ	ENSMSPG00010037356	pseudogene	Chr5:63539542-63540022 (+)
WSB/EiJ	ENSIUOG00005019549	pseudogene	Chr5:64739600-64740110 (+)

Homology

• Gene Tree
  Gm6517
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm6517
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000082420 (Evidence)
• NCBI Gene
  624662

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082420	Ensembl Gene Model | MGI Sequence Detail	511	C57BL/6J
transcript	ENSMUST00000121056	Ensembl | MGI Sequence Detail	511	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm6517:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46548	Chr5:67047607-67047625 (+)	-93 bp
Tssr46549	Chr5:67047668-67047672 (+)	-39 bp