Gm5087 Gene Detail

Summary

• Symbol
  Gm5087
• Name
  predicted gene 5087

• Feature Type
  lncRNA gene
• IDs
  MGI:3643653
  NCBI Gene: 328354
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:9185125-9312375 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 6.86 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4141 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643653	lncRNA gene	Chr14:9183695-9312375 (+)
129S1/SvImJ	ENSMUSG00200026104	lncRNA gene	Chr14:5835335-5971981 (+)
A/J	ENSMUSG00195032471	lncRNA gene	Chr14:6669284-6798204 (+)
A/J	ENSMUSG00195028921	protein coding gene	Chr14:6784851-6797305 (+)
AKR/J	ENSMUSG00220023933	lncRNA gene	Chr14:5828527-5957456 (+)
AKR/J	ENSMUSG00220023277	protein coding gene	Chr14:5944103-5956557 (+)
BALB/cJ	ENSMUSG00180025765	lncRNA gene	Chr14:5980911-6108207 (+)
BALB/cJ	ENSMUSG00180022280	protein coding gene	Chr14:6094858-6107309 (+)
C3H/HeJ	ENSMUSG00175009775	lncRNA gene	Chr14:5979555-6116217 (+)
C57BL/6NJ	ENSMUSG00215023484	lncRNA gene	Chr14:6228259-6355497 (+)
C57BL/6NJ	ENSMUSG00215016013	protein coding gene	Chr14:6342148-6354599 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005015	lincRNA gene	Chr14:6205106-6320833 (-)
CAST/EiJ	ENSTCUG00005031695	lncRNA gene	Chr14:5891986-6017616 (+)
CBA/J	ENSMUSG00210037146	lncRNA gene	Chr14:6201819-6338474 (+)
DBA/2J	ENSMUSG00185037961	lncRNA gene	Chr14:6207756-6344398 (+)
FVB/NJ	ENSMUSG00205027862	lncRNA gene	Chr14:6194707-6321977 (+)
FVB/NJ	ENSMUSG00205023831	protein coding gene	Chr14:6308628-6321079 (+)
JF1/MsJ	ENSUMUG00000025752	lncRNA gene	Chr14:6215689-6350454 (+)
LP/J	ENSMUSG00230007044	lncRNA gene	Chr14:7335716-7472336 (+)
NOD/ShiLtJ	ENSMUSG00190034983	lncRNA gene	Chr14:6224217-6351479 (+)
NOD/ShiLtJ	ENSMUSG00190026903	protein coding gene	Chr14:6338130-6350581 (+)
NZO/HlLtJ	ENSMUSG00225037278	lncRNA gene	Chr14:6617044-6744853 (+)
NZO/HlLtJ	ENSMUSG00225036811	protein coding gene	Chr14:6731503-6743955 (+)
PWK/PhJ	ENSLUMG00010034860	lncRNA gene	Chr14:27543413-27679930 (+)
SPRET/EiJ	ENSMSPG00010002567	lncRNA gene	Chr14:6519414-6658168 (+)
WSB/EiJ	ENSIUOG00005025537	lncRNA gene	Chr14:6057120-6186375 (+)

Homology

• Gene Tree
  Gm5087
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  3
• UniProt
  1
• CCDS
  CCDS49401.1

• Ensembl
  ENSMUSG00000051729 (Evidence)
• NCBI Gene
  328354

Representative Sequences			Length	Strain/Species
genomic	328354	NCBI Gene Model | MGI Sequence Detail	127251	C57BL/6J
transcript	NR_121588	RefSeq | MGI Sequence Detail	1921	C57BL/6
polypeptide	Q8C427	UniProt | EBI | MGI Sequence Detail	139	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 12
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm5087:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4250	Chr14:9185120-9185139 (+)	5 bp
Tssr127477	Chr14:9236860-9236866 (+)	51,738 bp
Tssr127476	Chr14:9299041-9299045 (+)	113,918 bp