Gm6212 Pseudogene Detail

Summary

• Symbol
  Gm6212
• Name
  predicted gene 6212

• Feature Type
  pseudogene
• IDs
  MGI:3643635
  NCBI Gene: 621324
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:119881424-119881643 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 63.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643635	pseudogene	Chr14:119881345-119882658 (+)
129S1/SvImJ	ENSMUSG00200025342	pseudogene	Chr14:108755287-108755506 (+)
A/J	ENSMUSG00195032306	pseudogene	Chr14:108511007-108511226 (+)
AKR/J	ENSMUSG00220008032	pseudogene	Chr14:108306951-108307170 (+)
BALB/cJ	ENSMUSG00180029606	pseudogene	Chr14:108002923-108003142 (+)
C3H/HeJ	ENSMUSG00175005915	pseudogene	Chr14:109942552-109942771 (+)
C57BL/6NJ	ENSMUSG00215028528	pseudogene	Chr14:108147957-108148176 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007508	pseudogene	Chr14:109589799-109590044 (+)
CBA/J	ENSMUSG00210027859	pseudogene	Chr14:108903635-108903854 (+)
DBA/2J	ENSMUSG00185014264	pseudogene	Chr14:114060135-114060354 (+)
FVB/NJ	ENSMUSG00205008388	pseudogene	Chr14:107616064-107616283 (+)
JF1/MsJ	ENSUMUG00000030999	pseudogene	Chr14:125091705-125092000 (+)
LP/J	ENSMUSG00230013328	pseudogene	Chr14:126043309-126043528 (+)
NOD/ShiLtJ	ENSMUSG00190026934	pseudogene	Chr14:108717189-108717408 (+)
NZO/HlLtJ	ENSMUSG00225029392	pseudogene	Chr14:116081293-116081586 (+)
PWK/PhJ	ENSLUMG00010031339	pseudogene	Chr14:108000150-108000429 (+)
SPRET/EiJ	ENSMSPG00010012676	pseudogene	Chr14:112223980-112224203 (+)
WSB/EiJ	ENSIUOG00005031991	pseudogene	Chr14:107926493-107926712 (+)

Homology

• Gene Tree
  Gm6212
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm6212
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000115196 (Evidence)
• NCBI Gene
  621324

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115196	Ensembl Gene Model | MGI Sequence Detail	220	C57BL/6J
transcript	ENSMUST00000226465	Ensembl | MGI Sequence Detail	220	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:11136 Wenger RH, et al., The genes for a mouse hematopoietic differentiation marker called the heat-stable antigen. Eur J Immunol. 1991 Apr;21(4):1039-46
• Latest
  J:124399 Li O, et al., Massive and destructive T cell response to homeostatic cue in CD24-deficient lymphopenic hosts. J Exp Med. 2006 Jul 10;203(7):1713-20

TSS for Gm6212:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127208	Chr14:119881446-119881488 (+)	43 bp