Gm5846 Pseudogene Detail

Summary

• Symbol
  Gm5846
• Name
  predicted gene 5846

• Feature Type
  pseudogene
• IDs
  MGI:3643624
  NCBI Gene: 545519
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:49335782-49337195 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 21.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643624	pseudogene	Chr3:49335603-49337294 (-)
129S1/SvImJ	ENSMUSG00200000370	pseudogene	Chr3:46155564-46156977 (-)
A/J	ENSMUSG00195000781	pseudogene	Chr3:46126617-46128006 (-)
AKR/J	ENSMUSG00220016148	pseudogene	Chr3:46169920-46171306 (-)
BALB/cJ	ENSMUSG00180000441	pseudogene	Chr3:46204051-46205440 (-)
C3H/HeJ	ENSMUSG00175002102	pseudogene	Chr3:46044664-46046054 (-)
C57BL/6NJ	ENSMUSG00215000640	pseudogene	Chr3:46463880-46465293 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009820	pseudogene	Chr13:5790122-5791508 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210000848	pseudogene	Chr3:46157681-46159069 (-)
DBA/2J	ENSMUSG00185000409	pseudogene	Chr3:46386043-46387429 (-)
FVB/NJ	ENSMUSG00205009826	pseudogene	Chr3:45370744-45372133 (-)
JF1/MsJ	ENSUMUG00000024305	pseudogene	Chr3:45806031-45807444 (-)
LP/J	ENSMUSG00230000373	pseudogene	Chr3:48332676-48334089 (-)
NOD/ShiLtJ	ENSMUSG00190000493	pseudogene	Chr3:46515864-46517250 (-)
NZO/HlLtJ	ENSMUSG00225018185	pseudogene	Chr3:50957663-50959076 (-)
PWK/PhJ	ENSLUMG00010009843	pseudogene	Chr3:45948039-45949452 (-)
SPRET/EiJ	ENSMSPG00010007390	pseudogene	Chr3:46598666-46598866 (-)
WSB/EiJ	ENSIUOG00005000470	pseudogene	Chr3:46347748-46349033 (-)

Homology

• Gene Tree
  Gm5846
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm5846
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104309 (Evidence)
• NCBI Gene
  545519

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104309	Ensembl Gene Model | MGI Sequence Detail	1414	C57BL/6J
transcript	ENSMUST00000193146	Ensembl | MGI Sequence Detail	1414	Not Applicable

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426