Gm5617 MGI Mouse Gene Detail - MGI:3643566

Sequence Map

Chr9:48406742-48407272 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643566	protein coding gene	Chr9:48406643-48407275 (+)
129S1/SvImJ	ENSMUSG00200017983	protein coding gene	Chr9:45575683-45576213 (+)
A/J	ENSMUSG00195023170	protein coding gene	Chr9:45260731-45261261 (+)
AKR/J	ENSMUSG00220031335	protein coding gene	Chr9:45348217-45348747 (+)
BALB/cJ	ENSMUSG00180028156	protein coding gene	Chr9:45372163-45372693 (+)
C3H/HeJ	ENSMUSG00175015347	protein coding gene	Chr9:45384337-45384867 (+)
C57BL/6NJ	ENSMUSG00215035622	protein coding gene	Chr9:45330033-45330563 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032168	protein coding gene	Chr9:45352501-45353120 (+)
CAST/EiJ	ENSTCUG00005013555	protein coding gene	Chr9:45308845-45309375 (+)
CBA/J	ENSMUSG00210015714	protein coding gene	Chr9:45457188-45457718 (+)
DBA/2J	ENSMUSG00185011859	protein coding gene	Chr9:45498599-45499129 (+)
FVB/NJ	ENSMUSG00205038581	protein coding gene	Chr9:45736824-45737354 (+)
JF1/MsJ	ENSUMUG00000015699	protein coding gene	Chr9:45547788-45548318 (+)
LP/J	ENSMUSG00230039997	protein coding gene	Chr9:45792280-45792810 (+)
NOD/ShiLtJ	ENSMUSG00190017542	protein coding gene	Chr9:45588026-45588556 (+)
NZO/HlLtJ	ENSMUSG00225041416	protein coding gene	Chr9:45753783-45754313 (+)
PWK/PhJ	ENSLUMG00010019896	protein coding gene	Chr9:45515620-45516150 (+)
SPRET/EiJ	ENSMSPG00010008710	protein coding gene	Chr9:46281998-46282528 (+)
WSB/EiJ	ENSIUOG00005018186	protein coding gene	Chr9:44992645-44993175 (+)

Vertebrate Orthology Source

Alliance of Genome Resources

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Phenotype Summary

1 phenotype from 2 alleles in 1 genetic background
1 phenotype reference

Male mice homozygous for a mutation are viable and show normal fertility.

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	ENSMUSG00000042293	Ensembl Gene Model \| MGI Sequence Detail	531	C57BL/6J	± kb
transcript	ENSMUST00000048824	Ensembl \| MGI Sequence Detail	531	Not Applicable
polypeptide	ENSMUSP00000040380	Ensembl \| MGI Sequence Detail	117	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000033323 uncharacterized protein C11orf71 homolog

(term hierarchy)
InterPro Domains

IPR031487 Protein of unknown function DUF4687

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Summaries

All 14

Phenotypes 1
Earliest

J:234235 Miyata H, et al., Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7704-10

TSS for Gm5617:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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