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Gm5617 Gene Detail
Summary
  • Symbol
    Gm5617
  • Name
    predicted gene 5617
  • Feature Type
    protein coding gene
  • IDs
    MGI:3643566
    NCBI Gene: 434402
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:48406742-48407272 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 26.43 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    43 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3643566
 protein coding gene Chr9:48406643-48407275 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034762
 protein coding gene Chr9:47271711-47272330 (+)
A/J MGP_AJ_G0034743
 protein coding gene Chr9:45873176-45873795 (+)
AKR/J MGP_AKRJ_G0034671
 protein coding gene Chr9:46828105-46828724 (+)
BALB/cJ MGP_BALBcJ_G0034735
 protein coding gene Chr9:45596971-45597590 (+)
C3H/HeJ MGP_C3HHeJ_G0034445
 protein coding gene Chr9:47283173-47283792 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035255
 protein coding gene Chr9:48622462-48623081 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032168
 protein coding gene Chr9:45352501-45353120 (+)
CAST/EiJ MGP_CASTEiJ_G0033767
 protein coding gene Chr9:47201579-47202198 (+)
CBA/J MGP_CBAJ_G0034417
 protein coding gene Chr9:50333373-50333992 (+)
DBA/2J MGP_DBA2J_G0034576
 protein coding gene Chr9:45726227-45726846 (+)
FVB/NJ MGP_FVBNJ_G0034517
 protein coding gene Chr9:44981282-44981901 (+)
LP/J MGP_LPJ_G0034657
 protein coding gene Chr9:47630514-47631133 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034561
 protein coding gene Chr9:52051978-52052597 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035276
 protein coding gene Chr9:46752744-46753363 (+)
PWK/PhJ MGP_PWKPhJ_G0033472
 protein coding gene Chr9:45687174-45687793 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033307
 protein coding gene Chr9:47067679-47068298 (+)
WSB/EiJ MGP_WSBEiJ_G0033880
 protein coding gene Chr9:46801454-46802073 (+)



Homology
more
  • Human Ortholog
    C11orf71, chromosome 11 open reading frame 71
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C11orf71, chromosome 11 open reading frame 71
  • Synonyms
    URLC7
  • Links
    NCBI Gene ID: 54494
    neXtProt AC: NX_Q6IPW1
    UniProt: Q6IPW1

  • Chr Location
    11q23.2; chr11:114391448-114400550 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 2 alleles in 1 genetic background
    4 phenotype references
Male mice homozygous for a mutation are viable and show normal fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    164
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000042293 Ensembl Gene Model | MGI Sequence Detail 531 C57BL/6J ±  kb
transcript ENSMUST00000048824 Ensembl | MGI Sequence Detail 531 Not Applicable  
polypeptide ENSMUSP00000040380 Ensembl | MGI Sequence Detail 117 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 164
    cDNA 164

    Microarray probesets 2
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:234235 Miyata H, et al., Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7704-10
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
01/24/2023
MGI 6.22 		The Jackson Laboratory