Gm5617 MGI Mouse Gene Detail - MGI:3643566

Sequence Map

Chr9:48406742-48407272 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643566	protein coding gene	Chr9:48406643-48407275 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0034762	protein coding gene	Chr9:47271711-47272330 (+)
A/J	MGP_AJ_G0034743	protein coding gene	Chr9:45873176-45873795 (+)
AKR/J	MGP_AKRJ_G0034671	protein coding gene	Chr9:46828105-46828724 (+)
BALB/cJ	MGP_BALBcJ_G0034735	protein coding gene	Chr9:45596971-45597590 (+)
C3H/HeJ	MGP_C3HHeJ_G0034445	protein coding gene	Chr9:47283173-47283792 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035255	protein coding gene	Chr9:48622462-48623081 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032168	protein coding gene	Chr9:45352501-45353120 (+)
CAST/EiJ	MGP_CASTEiJ_G0033767	protein coding gene	Chr9:47201579-47202198 (+)
CBA/J	MGP_CBAJ_G0034417	protein coding gene	Chr9:50333373-50333992 (+)
DBA/2J	MGP_DBA2J_G0034576	protein coding gene	Chr9:45726227-45726846 (+)
FVB/NJ	MGP_FVBNJ_G0034517	protein coding gene	Chr9:44981282-44981901 (+)
LP/J	MGP_LPJ_G0034657	protein coding gene	Chr9:47630514-47631133 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034561	protein coding gene	Chr9:52051978-52052597 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035276	protein coding gene	Chr9:46752744-46753363 (+)
PWK/PhJ	MGP_PWKPhJ_G0033472	protein coding gene	Chr9:45687174-45687793 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0033307	protein coding gene	Chr9:47067679-47068298 (+)
WSB/EiJ	MGP_WSBEiJ_G0033880	protein coding gene	Chr9:46801454-46802073 (+)

Vertebrate Orthology Source

Alliance of Genome Resources

less

Phenotype Summary

1 phenotype from 2 alleles in 1 genetic background
1 phenotype reference

Male mice homozygous for a mutation are viable and show normal fertility.

less

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

less

Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

less

			Length	Strain/Species	Flank
genomic	ENSMUSG00000042293	Ensembl Gene Model \| MGI Sequence Detail	531	C57BL/6J	± kb
transcript	ENSMUST00000048824	Ensembl \| MGI Sequence Detail	531	Not Applicable
polypeptide	ENSMUSP00000040380	Ensembl \| MGI Sequence Detail	117	Not Applicable

less

UniProt

1 Sequence
Protein Ontology

PR:000033323 uncharacterized protein C11orf71 homolog

(term hierarchy)
InterPro Domains

IPR031487 Protein of unknown function DUF4687

less

Summaries

All 13

Phenotypes 1
Earliest

J:234235 Miyata H, et al., Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7704-10

TSS for Gm5617:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 03/25/2025 MGI 6.24