Rps6-ps3 Pseudogene Detail

Summary

• Symbol
  Rps6-ps3
• Name
  ribosomal protein S6, pseudogene 3
• Synonyms
  Gm5618

• Feature Type
  pseudogene
• IDs
  MGI:3643565
  NCBI Gene: 434404
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:53600834-53601583 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 29.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643565	pseudogene	Chr9:53600795-53601621 (-)
129S1/SvImJ	ENSMUSG00200035898	pseudogene	Chr9:50732000-50732749 (-)
A/J	ENSMUSG00195024058	pseudogene	Chr9:50437214-50437963 (-)
AKR/J	ENSMUSG00220033036	pseudogene	Chr9:50558591-50559340 (-)
BALB/cJ	ENSMUSG00180032138	pseudogene	Chr9:50550568-50551317 (-)
C3H/HeJ	ENSMUSG00175015975	pseudogene	Chr9:50562499-50563248 (-)
C57BL/6NJ	ENSMUSG00215037436	pseudogene	Chr9:50534053-50534802 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210043113	pseudogene	Chr9:50673185-50673934 (-)
DBA/2J	ENSMUSG00185012591	pseudogene	Chr9:50691275-50692024 (-)
FVB/NJ	ENSMUSG00205045394	pseudogene	Chr9:50954817-50955566 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230022062	pseudogene	Chr14:44037966-44038715 (-)
LP/J	ENSMUSG00230010981	pseudogene	Chr17:91816831-91817580 (+)
LP/J	ENSMUSG00230018860	pseudogene	Chr4:85813391-85815550 (-)
LP/J	ENSMUSG00230042456	pseudogene	Chr9:50943299-50944048 (-)
NOD/ShiLtJ	ENSMUSG00190045393	pseudogene	Chr9:50752895-50753644 (-)
NZO/HlLtJ	ENSMUSG00225028320	pseudogene	Chr9:50947397-50948146 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005020667	pseudogene	Chr5:42503621-42504370 (+)
WSB/EiJ	ENSIUOG00005022798	pseudogene	Chr9:50166532-50167281 (-)

Homology

• Gene Tree
  Rps6-ps3
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082465 (Evidence)
• NCBI Gene
  434404

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082465	Ensembl Gene Model | MGI Sequence Detail	750	C57BL/6J
transcript	ENSMUST00000118010	Ensembl | MGI Sequence Detail	750	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;