Gm16380 Pseudogene Detail

Summary

• Symbol
  Gm16380
• Name
  predicted pseudogene 16380

• Feature Type
  pseudogene
• IDs
  MGI:3643564
  NCBI Gene: 100038996
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:53791368-53791845 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 29.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  13 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643564	pseudogene	Chr9:53791303-53791845 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0034818	protein coding gene	Chr9:52929014-52929493 (+)
A/J	MGP_AJ_G0034799	protein coding gene	Chr9:51254699-51255178 (+)
AKR/J	MGP_AKRJ_G0034727	protein coding gene	Chr9:52374861-52375340 (+)
BALB/cJ	MGP_BALBcJ_G0034791	protein coding gene	Chr9:51002533-51003012 (+)
C3H/HeJ	MGP_C3HHeJ_G0034501	protein coding gene	Chr9:52856130-52856609 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0035310	protein coding gene	Chr9:54421592-54424139 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018155	protein coding gene	Chr12:107105331-107109562 (+)
CAST/EiJ	MGP_CASTEiJ_G0033823	protein coding gene	Chr9:52857360-52857839 (+)
CBA/J	MGP_CBAJ_G0034472	protein coding gene	Chr9:56271039-56271518 (+)
DBA/2J	MGP_DBA2J_G0034631	protein coding gene	Chr9:51124579-51125058 (+)
FVB/NJ	MGP_FVBNJ_G0034573	protein coding gene	Chr9:50313060-50313539 (+)
LP/J	MGP_LPJ_G0034713	protein coding gene	Chr9:53233955-53234434 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034616	protein coding gene	Chr9:57858743-57859222 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0035332	protein coding gene	Chr9:52387947-52388426 (+)
PWK/PhJ	MGP_PWKPhJ_G0033527	protein coding gene	Chr9:51103160-51103758 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0019004	protein coding gene	Chr12:107550302-107554574 (+)
WSB/EiJ	MGP_WSBEiJ_G0033935	protein coding gene	Chr9:52367454-52367933 (+)

Homology

• Gene Tree
  Gm16380
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000059830 (Evidence)
• NCBI Gene
  100038996

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000059830	Ensembl Gene Model | MGI Sequence Detail	478	C57BL/6J
transcript	ENSMUST00000077997	Ensembl | MGI Sequence Detail	478	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;