Rpl21-ps6 Pseudogene Detail

Summary

• Symbol
  Rpl21-ps6
• Name
  ribosomal protein L21, pseudogene 6
• Synonyms
  Gm5495

• Feature Type
  pseudogene
• IDs
  MGI:3643554
  NCBI Gene: 433125
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:56222403-56222870 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 29.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643554	pseudogene	Chr17:56222370-56222906 (-)
129S1/SvImJ	ENSMUSG00200017038	pseudogene	Chr17:51497450-51497917 (-)
A/J	ENSMUSG00195007378	pseudogene	Chr17:52884909-52885376 (-)
AKR/J	ENSMUSG00220013558	pseudogene	Chr17:51934330-51934797 (-)
BALB/cJ	ENSMUSG00180006482	pseudogene	Chr17:52642524-52642991 (-)
C3H/HeJ	ENSMUSG00175007512	pseudogene	Chr17:51958618-51959085 (-)
C57BL/6NJ	ENSMUSG00215010250	pseudogene	Chr17:51572724-51573191 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019369	pseudogene	Chr17:52692287-52692769 (-)
CBA/J	ENSMUSG00210029036	pseudogene	Chr17:51725672-51726139 (-)
DBA/2J	ENSMUSG00185009270	pseudogene	Chr17:54595537-54596004 (-)
FVB/NJ	ENSMUSG00205007419	pseudogene	Chr17:52273143-52273610 (-)
JF1/MsJ	ENSUMUG00000035759	pseudogene	Chr17:54278387-54278869 (-)
LP/J	ENSMUSG00230028944	pseudogene	Chr17:55574905-55575372 (-)
NOD/ShiLtJ	ENSMUSG00190011306	pseudogene	Chr17:51728269-51728736 (-)
NZO/HlLtJ	ENSMUSG00225043364	pseudogene	Chr17:57858752-57859219 (-)
PWK/PhJ	ENSLUMG00010009371	pseudogene	Chr17:51539506-51539988 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005024056	pseudogene	Chr17:52629690-52630157 (-)

Homology

• Gene Tree
  Rpl21-ps6
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000059912 (Evidence)
• NCBI Gene
  433125

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000059912	Ensembl Gene Model | MGI Sequence Detail	468	C57BL/6J
transcript	ENSMUST00000074828	Ensembl | MGI Sequence Detail	468	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 2

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;