Gm5460 Gene Detail

Summary

• Symbol
  Gm5460
• Name
  predicted gene 5460

• Feature Type
  protein coding gene
• IDs
  MGI:3643519
  NCBI Gene: 432838
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:33738252-33769071 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 20.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  952 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643519	protein coding gene	Chr14:33738252-33770150 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0021163	protein coding gene	Chr14:27375247-27381110 (+)
A/J	MGP_AJ_G0021111	protein coding gene	Chr14:26312755-26318649 (+)
AKR/J	MGP_AKRJ_G0021088	protein coding gene	Chr14:27485969-27491868 (+)
BALB/cJ	MGP_BALBcJ_G0021115	protein coding gene	Chr14:26499579-26505482 (+)
C3H/HeJ	MGP_C3HHeJ_G0020898	protein coding gene	Chr14:27400766-27406657 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0021547	protein coding gene	Chr14:28431629-28437528 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019109	protein coding gene	Chr14:26351749-26357736 (+)
CAST/EiJ	MGP_CASTEiJ_G0020423	protein coding gene	Chr14:27216755-27222619 (+)
CBA/J	MGP_CBAJ_G0020865	protein coding gene	Chr14:29455461-29461356 (+)
DBA/2J	MGP_DBA2J_G0020987	protein coding gene	Chr14:26349747-26355643 (+)
FVB/NJ	MGP_FVBNJ_G0020971	protein coding gene	Chr14:26315181-26321075 (+)
LP/J	MGP_LPJ_G0021056	protein coding gene	Chr14:27709086-27714949 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020997	protein coding gene	Chr14:28611106-28617039 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0021580	protein coding gene	Chr14:27317668-27324941 (+)
PWK/PhJ	MGP_PWKPhJ_G0020171	protein coding gene	Chr14:25843890-25849757 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0019995	protein coding gene	Chr14:26923632-26929633 (+)
WSB/EiJ	MGP_WSBEiJ_G0020478	protein coding gene	Chr14:27371911-27377815 (+)

Homology

• MGI Vertebrate Homology
  Gm5460 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Gm5460
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  CvDC
• Find Mice (IMSR)
  15 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  8
• UniProt
  3
• CCDS
  CCDS49442.1

• Ensembl
  ENSMUSG00000072624 (Evidence)
• NCBI Gene
  432838

Representative Sequences			Length	Strain/Species
genomic	432838	NCBI Gene Model | MGI Sequence Detail	30820	C57BL/6J
transcript	NM_001034880	RefSeq | MGI Sequence Detail	3112	C57BL/6
polypeptide	NP_001030052	RefSeq | MGI Sequence Detail	601	C57BL/6

Protein
Information

• UniProt
  3 Sequences
• InterPro Domains
  IPR008400 Anthrax toxin receptor, extracellular domain
  IPR036465 von Willebrand factor A-like domain superfamily
  IPR002035 von Willebrand factor, type A
• GlyGen
  Q3UQ97 1 site

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm5460:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125056	Chr14:33738995-33739008 (+)	750 bp
Tssr125057	Chr14:33739013-33739024 (+)	767 bp
Tssr125058	Chr14:33739031-33739046 (+)	787 bp