Panct2 Gene Detail

Summary

• Symbol
  Panct2
• Name
  pluripotency-associated noncoding transcript 2
• Synonyms
  Gm5101

• Feature Type
  lncRNA gene
• IDs
  MGI:3643517
  NCBI Gene: 329217
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:96798851-96808959 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 47.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  468 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643517	lncRNA gene	Chr1:96798851-96835521 (+)
129S1/SvImJ	ENSMUSG00200000260	lncRNA gene	Chr1:93982447-94019139 (+)
A/J	ENSMUSG00195000502	lncRNA gene	Chr1:93509021-93545697 (+)
AKR/J	ENSMUSG00220000251	lncRNA gene	Chr1:93764956-93801619 (+)
BALB/cJ	ENSMUSG00180005858	lncRNA gene	Chr1:93816745-93853422 (+)
C3H/HeJ	ENSMUSG00175005608	lncRNA gene	Chr1:93716807-93753479 (+)
C57BL/6NJ	ENSMUSG00215000375	lncRNA gene	Chr1:93705111-93741787 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002380	antisense lncRNA gene	Chr1:89508626-89549004 (+)
CAST/EiJ	ENSTCUG00005000119	lncRNA gene	Chr1:93449618-93492281 (+)
CBA/J	ENSMUSG00210000166	lncRNA gene	Chr1:93566816-93603495 (+)
DBA/2J	ENSMUSG00185014318	lncRNA gene	Chr1:98039733-98076424 (+)
FVB/NJ	ENSMUSG00205000922	lncRNA gene	Chr1:92920220-92956892 (+)
JF1/MsJ	ENSUMUG00000025032	lncRNA gene	Chr1:96793354-96836030 (+)
LP/J	ENSMUSG00230024013	lncRNA gene	Chr1:97303381-97340070 (+)
NOD/ShiLtJ	ENSMUSG00190000449	lncRNA gene	Chr1:93628797-93665488 (+)
NZO/HlLtJ	ENSMUSG00225003787	lncRNA gene	Chr1:101209558-101246229 (+)
PWK/PhJ	ENSLUMG00010006711	lncRNA gene	Chr1:93173989-93210669 (+)
SPRET/EiJ	ENSMSPG00010000776	lncRNA gene	Chr1:95254376-95298695 (+)
WSB/EiJ	ENSIUOG00005000255	lncRNA gene	Chr1:93288332-93325024 (+)

Homology

• Gene Tree
  Panct2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Panct2
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000097814 (Evidence)
• NCBI Gene
  329217

Representative Sequences			Length	Strain/Species
genomic	329217	NCBI Gene Model | MGI Sequence Detail	10109	C57BL/6J
transcript	NR_131964	RefSeq | MGI Sequence Detail	3917	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:201193 Chakraborty D, et al., Combined RNAi and localization for functionally dissecting long noncoding RNAs. Nat Methods. 2012 Apr;9(4):360-2

TSS for Panct2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8227	Chr1:96799950-96799978 (+)	1,113 bp
Tssr8228	Chr1:96799984-96800022 (+)	1,152 bp