Gm6228 Pseudogene Detail

Summary

• Symbol
  Gm6228
• Name
  predicted gene 6228
• Synonyms
  EG621246

• Feature Type
  pseudogene
• IDs
  MGI:3643481
  NCBI Gene: 621467
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:134449958-134452969 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 57.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643481	pseudogene	ChrX:134449958-134452970 (+)
129S1/SvImJ	ENSMUSG00200048546	pseudogene	ChrX:113522031-113525046 (+)
A/J	ENSMUSG00195048723	pseudogene	ChrX:117308659-117311671 (+)
AKR/J	ENSMUSG00220013037	pseudogene	ChrX:110755508-110758527 (+)
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175035908	pseudogene	ChrX:117248186-117251203 (-)
C57BL/6NJ	ENSMUSG00215045594	pseudogene	ChrX:114151907-114154918 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185030092	pseudogene	ChrX:128502809-128505820 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230041044	pseudogene	ChrX:135130722-135133733 (+)
NOD/ShiLtJ	ENSMUSG00190044295	pseudogene	ChrX:114002563-114005574 (+)
NZO/HlLtJ	ENSMUSG00225036960	pseudogene	ChrX:139393901-139396949 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010039658	pseudogene	ChrX:116986169-116989351 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6228
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm6228
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000096119 (Evidence)
• NCBI Gene
  621467

Representative Sequences			Length	Strain/Species
genomic	621467	NCBI Gene Model | MGI Sequence Detail	3012	C57BL/6J

References

• Summaries
  All 7

  Diseases 1

  Phenotypes 2
• Earliest
  J:199138 Zhou J, et al., A 1.1-Mb segmental deletion on the X chromosome causes meiotic failure in male mice. Biol Reprod. 2013 Jun;88(6):159
• Latest
  J:210663 Zhou J, et al., Respiratory failure, cleft palate and epilepsy in the mouse model of human Xq22.1 deletion syndrome. Hum Mol Genet. 2014 Jul 15;23(14):3823-9