Gm8062 Pseudogene Detail

Summary

• Symbol
  Gm8062
• Name
  predicted pseudogene 8062

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3643433
  NCBI Gene: 102632224
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:73978051-73978494 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 40.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  14 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643433	pseudogene	Chr13:73978035-73978605 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011037	pseudogene	Chr13:74312178-74312621 (+)
A/J	MGP_AJ_G0011039	pseudogene	Chr13:71654629-71655072 (+)
AKR/J	MGP_AKRJ_G0010994	pseudogene	Chr13:73907638-73908081 (+)
BALB/cJ	MGP_BALBcJ_G0011014	pseudogene	Chr13:72144494-72144936 (+)
C3H/HeJ	MGP_C3HHeJ_G0010913	pseudogene	Chr13:73586484-73586927 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010885	pseudogene	Chr13:79624831-79625274 (+)
DBA/2J	MGP_DBA2J_G0010930	pseudogene	Chr13:71474632-71475075 (+)
FVB/NJ	MGP_FVBNJ_G0010941	pseudogene	Chr13:70498678-70499121 (+)
LP/J	MGP_LPJ_G0011019	pseudogene	Chr13:74549820-74550263 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010926	pseudogene	Chr13:78055640-78056082 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011274	pseudogene	Chr13:73213861-73214304 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010784	pseudogene	Chr13:73768174-73768607 (+)

Homology

• Gene Tree
  Gm8062
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm8062
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  2

• Ensembl
  ENSMUSG00000066714 (Evidence)
• NCBI Gene
  102632224

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000066714	Ensembl Gene Model | MGI Sequence Detail	444	C57BL/6J
transcript	ENSMUST00000139696	Ensembl | MGI Sequence Detail	444	Not Applicable
polypeptide	XP_036014170	RefSeq | MGI Sequence Detail	184	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm8062:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120338	Chr13:73978014-73978021 (+)	-33 bp