Gm6210 Pseudogene Detail

Summary

• Symbol
  Gm6210
• Name
  predicted gene 6210

• Feature Type
  pseudogene
• IDs
  MGI:3643375
  NCBI Gene: 621306
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:75273101-75275042 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 32.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643375	pseudogene	Chr6:75273018-75275120 (-)
129S1/SvImJ	ENSMUSG00200012543	pseudogene	Chr6:72178690-72180631 (-)
129S1/SvImJ	ENSMUSG00200033790	pseudogene	Chr2:7602572-7604513 (+)
A/J	ENSMUSG00195012792	pseudogene	Chr6:71887532-71889473 (-)
A/J	ENSMUSG00195007333	pseudogene	Chr10:11557001-11562094 (-)
AKR/J	ENSMUSG00220014351	pseudogene	Chr2:17447106-17452199 (-)
AKR/J	ENSMUSG00220007158	pseudogene	Chr2:7729727-7731668 (+)
AKR/J	ENSMUSG00220045301	pseudogene	Chr6:70896099-70898040 (-)
BALB/cJ	ENSMUSG00180016191	pseudogene	Chr10:11713922-11719015 (-)
BALB/cJ	ENSMUSG00180010373	pseudogene	Chr6:72267852-72269793 (-)
C3H/HeJ	ENSMUSG00175014720	pseudogene	Chr6:105149492-105151433 (+)
C3H/HeJ	ENSMUSG00175021376	pseudogene	Chr10:11710081-11715174 (-)
C57BL/6NJ	ENSMUSG00215016050	pseudogene	Chr6:72273160-72275101 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040170	pseudogene	ChrX:33486437-33488378 (-)
CAST/EiJ	ENSTCUG00005008440	pseudogene	Chr6:72381110-72383050 (-)
CBA/J	ENSMUSG00210015964	pseudogene	Chr10:11659752-11664845 (-)
CBA/J	ENSMUSG00210011590	pseudogene	Chr6:72093320-72095261 (-)
DBA/2J	ENSMUSG00185001111	pseudogene	Chr6:72649803-72651744 (-)
FVB/NJ	ENSMUSG00205032192	pseudogene	Chr6:71366498-71368439 (-)
FVB/NJ	ENSMUSG00205038870	pseudogene	Chr2:7689052-7690987 (+)
JF1/MsJ	ENSUMUG00000051376	pseudogene	Chr18:38280547-38282488 (+)
JF1/MsJ	ENSUMUG00000033424	pseudogene	ChrX:61414013-61415954 (-)
JF1/MsJ	ENSUMUG00000001924	pseudogene	Chr6:11682223-11684164 (+)
JF1/MsJ	ENSUMUG00000022628	pseudogene	Chr6:71681580-71683521 (-)
LP/J	ENSMUSG00230008283	pseudogene	Chr6:73754140-73756081 (-)
LP/J	ENSMUSG00230019689	pseudogene	Chr10:13313019-13318112 (-)
LP/J	ENSMUSG00230035133	pseudogene	Chr9:38082099-38085312 (+)
LP/J	ENSMUSG00230003937	pseudogene	Chr2:9653317-9655258 (+)
NOD/ShiLtJ	ENSMUSG00190011623	pseudogene	Chr10:11691856-11696949 (-)
NOD/ShiLtJ	ENSMUSG00190002039	pseudogene	Chr6:71639140-71641081 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010043838	pseudogene	ChrX:31132110-31134049 (-)
PWK/PhJ	ENSLUMG00010022563	pseudogene	Chr6:71093436-71095377 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005024718	pseudogene	Chr10:11295594-11300687 (-)
WSB/EiJ	ENSIUOG00005026434	pseudogene	Chr2:7784189-7786130 (+)
WSB/EiJ	ENSIUOG00005019084	pseudogene	Chr6:72650942-72652883 (-)

Homology

• Gene Tree
  Gm6210
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000107951 (Evidence)
• NCBI Gene
  621306

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107951	Ensembl Gene Model | MGI Sequence Detail	1942	C57BL/6J
transcript	ENSMUST00000204734	Ensembl | MGI Sequence Detail	1942	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6210:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61520	Chr6:75275121-75275128 (-)	-83 bp