F730311O21Rik Gene Detail

Summary

• Symbol
  F730311O21Rik
• Name
  RIKEN cDNA F730311O21 gene
• Synonyms
  EG622304

• Feature Type
  lncRNA gene
• IDs
  MGI:3643355
  NCBI Gene: 622304
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr1:132269668-132279102 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  335 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643355	lncRNA gene	Chr1:132269668-132279295 (+)
129S1/SvImJ	ENSMUSG00200009036	lncRNA gene	Chr1:129832859-129842712 (+)
A/J	ENSMUSG00195046257	lncRNA gene	Chr1:128934483-128943851 (+)
AKR/J	ENSMUSG00220050703	lncRNA gene	Chr1:128764068-128773933 (+)
BALB/cJ	ENSMUSG00180038310	lncRNA gene	Chr1:129480656-129490024 (+)
C3H/HeJ	ENSMUSG00175045543	lncRNA gene	Chr1:129179015-129188383 (+)
C57BL/6NJ	ENSMUSG00215045607	lncRNA gene	Chr1:129194808-129204176 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004497	lincRNA gene	Chr1:123930717-123938201 (+)
CAST/EiJ	ENSTCUG00005038677	lncRNA gene	Chr1:128095427-128104608 (+)
CBA/J	ENSMUSG00210028576	lncRNA gene	Chr1:129075424-129084792 (+)
DBA/2J	ENSMUSG00185035132	lncRNA gene	Chr1:133431657-133441510 (+)
FVB/NJ	ENSMUSG00205044845	lncRNA gene	Chr1:128411824-128421196 (+)
JF1/MsJ	ENSUMUG00000053541	lncRNA gene	Chr1:132592749-132602056 (+)
LP/J	ENSMUSG00230039544	lncRNA gene	Chr1:133019853-133029198 (+)
NOD/ShiLtJ	ENSMUSG00190045898	lncRNA gene	Chr1:129089004-129098372 (+)
NZO/HlLtJ	ENSMUSG00225021892	lncRNA gene	Chr1:136740165-136749246 (+)
PWK/PhJ	ENSLUMG00010028005	lncRNA gene	Chr1:128210857-128220086 (+)
SPRET/EiJ	ENSMSPG00010046332	lncRNA gene	Chr1:131011257-131020583 (+)
WSB/EiJ	ENSIUOG00005048277	lncRNA gene	Chr1:128821354-128830418 (+)

Homology

• Gene Tree
  F730311O21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving F730311O21Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  69
• RefSeq
  6

• Ensembl
  ENSMUSG00000100658 (Evidence)
• NCBI Gene
  622304

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100658	Ensembl Gene Model | MGI Sequence Detail	9435	C57BL/6J
transcript	ENSMUST00000189288	Ensembl | MGI Sequence Detail	5447	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for F730311O21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8738	Chr1:132269753-132269780 (+)	99 bp
Tssr8739	Chr1:132269791-132269810 (+)	133 bp
Tssr8740	Chr1:132270035-132270042 (+)	371 bp
Tssr8741	Chr1:132270075-132270082 (+)	411 bp
Tssr8742	Chr1:132270085-132270100 (+)	425 bp
Tssr8743	Chr1:132270101-132270110 (+)	438 bp