Gm6340 Pseudogene Detail

Summary

• Symbol
  Gm6340
• Name
  predicted pseudogene 6340

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3643354
  NCBI Gene: 102640775
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:32935117-32935349 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 20.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643354	pseudogene	Chr14:32935116-32935556 (+)
129S1/SvImJ	ENSMUSG00200038579	pseudogene	Chr14:24759965-24760197 (+)
A/J	ENSMUSG00195014614	pseudogene	Chr14:25835733-25835965 (+)
AKR/J	ENSMUSG00220036456	pseudogene	Chr14:24954461-24954693 (+)
BALB/cJ	ENSMUSG00180030194	pseudogene	Chr14:24924219-24924451 (+)
C3H/HeJ	ENSMUSG00175044527	pseudogene	Chr14:24991392-24991624 (+)
C57BL/6NJ	ENSMUSG00215035855	pseudogene	Chr14:25228077-25228309 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025161	pseudogene	Chr14:25074767-25074998 (+)
CBA/J	ENSMUSG00210046084	pseudogene	Chr14:25238565-25238797 (+)
DBA/2J	ENSMUSG00185044082	pseudogene	Chr14:29512089-29512319 (+)
FVB/NJ	ENSMUSG00205038257	pseudogene	Chr14:25096113-25096345 (+)
JF1/MsJ	ENSUMUG00000049838	pseudogene	Chr14:36755905-36756137 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190020429	pseudogene	Chr14:25247837-25248069 (+)
NZO/HlLtJ	ENSMUSG00225037532	pseudogene	Chr14:31122573-31122805 (+)
PWK/PhJ	ENSLUMG00010022661	pseudogene	Chr14:13357820-13358052 (+)
SPRET/EiJ	ENSMSPG00010043399	pseudogene	Chr14:26938610-26938842 (+)
WSB/EiJ	ENSIUOG00005012663	pseudogene	Chr14:25084687-25084919 (+)

Homology

• Gene Tree
  Gm6340
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000115523 (Evidence)
• NCBI Gene
  102640775

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115523	Ensembl Gene Model | MGI Sequence Detail	233	C57BL/6J
transcript	ENSMUST00000227859	Ensembl | MGI Sequence Detail	233	Not Applicable
polypeptide	XP_036014872	RefSeq | MGI Sequence Detail	78	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14