Gm16425 Pseudogene Detail

Summary

• Symbol
  Gm16425
• Name
  predicted gene 16425

• Feature Type
  pseudogene
• IDs
  MGI:3643338
  NCBI Gene: 670326
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:19585470-19588599 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 10.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  334 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643338	pseudogene	Chr8:19585347-19591222 (+)
129S1/SvImJ	ENSMUSG00200033472	pseudogene	Chr8:16432423-16435553 (+)
A/J	ENSMUSG00195043047	pseudogene	Chr8:16855508-16858638 (+)
AKR/J	ENSMUSG00220034879	pseudogene	Chr8:16583787-16586917 (+)
BALB/cJ	ENSMUSG00180027451	pseudogene	Chr8:16475870-16479001 (+)
C3H/HeJ	ENSMUSG00175042690	pseudogene	Chr8:16653042-16656172 (+)
C57BL/6NJ	ENSMUSG00215028510	pseudogene	Chr8:16555780-16558910 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012838	pseudogene	ChrX:102979836-102982537 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210043338	pseudogene	Chr8:16497051-16500181 (+)
DBA/2J	ENSMUSG00185007265	pseudogene	Chr8:16620532-16623662 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000034370	pseudogene	Chr8:16520340-16523469 (+)
LP/J	ENSMUSG00230023924	pseudogene	Chr8:18664220-18667351 (+)
NOD/ShiLtJ	ENSMUSG00190039598	pseudogene	Chr8:16627465-16630595 (+)
NZO/HlLtJ	ENSMUSG00225042323	pseudogene	Chr8:26519159-26522288 (+)
PWK/PhJ	ENSLUMG00010032425	pseudogene	Chr8:16325373-16328503 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005020993	pseudogene	Chr8:16579012-16582143 (-)

Homology

• Gene Tree
  Gm16425
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm16425
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000083218 (Evidence)
• NCBI Gene
  670326

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083218	Ensembl Gene Model | MGI Sequence Detail	3130	C57BL/6J
transcript	ENSMUST00000118143	Ensembl | MGI Sequence Detail	3130	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:332494 Dong X, et al., Keratinocyte-derived defensins activate neutrophil-specific receptors Mrgpra2a/b to prevent skin dysbiosis and bacterial infection. Immunity. 2022 Jul 15;55(9):1645-1662

TSS for Gm16425:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76544	Chr8:19585442-19585479 (+)	-9 bp
Tssr76545	Chr8:19585842-19585859 (+)	381 bp