Gm4971 Pseudogene Detail

Summary

• Symbol
  Gm4971
• Name
  predicted gene 4971

• Feature Type
  pseudogene
• IDs
  MGI:3643321
  NCBI Gene: 244061
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:73335240-73336311 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 42.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643321	pseudogene	Chr7:73335240-73336349 (-)
129S1/SvImJ	ENSMUSG00200012270	pseudogene	Chr7:60101009-60102116 (-)
A/J	ENSMUSG00195014425	pseudogene	Chr7:64495193-64496300 (-)
AKR/J	ENSMUSG00220020773	pseudogene	Chr7:58041609-58042716 (-)
BALB/cJ	ENSMUSG00180013350	pseudogene	Chr7:61204288-61205395 (-)
C3H/HeJ	ENSMUSG00175021608	pseudogene	Chr7:62002065-62003172 (-)
C57BL/6NJ	ENSMUSG00215032069	pseudogene	Chr7:61136216-61137323 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004141	pseudogene	Chr7:64627370-64628477 (-)
CBA/J	ENSMUSG00210024375	pseudogene	Chr7:61860748-61861855 (-)
DBA/2J	ENSMUSG00185001272	pseudogene	Chr7:66183476-66184583 (-)
FVB/NJ	ENSMUSG00205031771	pseudogene	Chr7:61840479-61841586 (-)
JF1/MsJ	ENSUMUG00000027737	pseudogene	Chr7:70913015-70914122 (-)
LP/J	ENSMUSG00230015187	pseudogene	Chr7:72238204-72239311 (-)
NOD/ShiLtJ	ENSMUSG00190020077	pseudogene	Chr7:61955948-61957055 (-)
NZO/HlLtJ	ENSMUSG00225017929	pseudogene	Chr7:70506208-70507315 (-)
PWK/PhJ	ENSLUMG00010019538	pseudogene	Chr7:60454661-60455768 (-)
SPRET/EiJ	ENSMSPG00010026385	pseudogene	Chr7:60873394-60874510 (-)
WSB/EiJ	ENSIUOG00005023178	pseudogene	Chr7:62330364-62331471 (-)

Homology

• Gene Tree
  Gm4971
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm4971
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000108337 (Evidence)
• NCBI Gene
  244061

Representative Sequences			Length	Strain/Species
genomic	244061	NCBI Gene Model | MGI Sequence Detail	1072	C57BL/6J
transcript	NR_033604	RefSeq | MGI Sequence Detail	1072	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 11
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm4971:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72974	Chr7:73336344-73336348 (-)	-35 bp