Nfyc-ps Pseudogene Detail

Summary

• Symbol
  Nfyc-ps
• Name
  nuclear transcription factor-Y gamma, pseudogene
• Synonyms
  Gm9144

• Feature Type
  pseudogene
• IDs
  MGI:3643264
  NCBI Gene: 668388
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:7909900-7910907 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 3.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643264	pseudogene	Chr12:7909688-7911645 (+)
129S1/SvImJ	ENSMUSG00200023956	pseudogene	Chr12:4879700-4880707 (+)
A/J	ENSMUSG00195017175	pseudogene	Chr12:4912594-4913601 (+)
AKR/J	ENSMUSG00220033017	pseudogene	Chr12:4940408-4941415 (+)
BALB/cJ	ENSMUSG00180015787	pseudogene	Chr12:4908960-4909967 (+)
C3H/HeJ	ENSMUSG00175009943	pseudogene	Chr12:4888618-4889625 (+)
C57BL/6NJ	ENSMUSG00215024887	pseudogene	Chr12:4836937-4837944 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023132	pseudogene	Chr12:4699128-4700639 (+)
CBA/J	ENSMUSG00210013747	pseudogene	Chr12:4919830-4920837 (+)
DBA/2J	ENSMUSG00185021957	pseudogene	Chr12:4883953-4884960 (+)
FVB/NJ	ENSMUSG00205003841	pseudogene	Chr12:4692561-4693568 (+)
JF1/MsJ	ENSUMUG00000041472	pseudogene	Chr12:4851729-4853241 (+)
LP/J	ENSMUSG00230012094	pseudogene	Chr12:6713968-6714975 (+)
NOD/ShiLtJ	ENSMUSG00190008572	pseudogene	Chr12:6128157-6129164 (+)
NZO/HlLtJ	ENSMUSG00225019252	pseudogene	Chr12:8774028-8775035 (+)
PWK/PhJ	ENSLUMG00010017349	pseudogene	Chr12:4684072-4685079 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005002444	pseudogene	Chr12:4928031-4929038 (+)

Homology

• Gene Tree
  Nfyc-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000073233 (Evidence)
• NCBI Gene
  668388

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073233	Ensembl Gene Model | MGI Sequence Detail	1008	C57BL/6J
transcript	ENSMUST00000101625	Ensembl | MGI Sequence Detail	1008	Not Applicable

Other
Accession IDs

MGI:6363023

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14