Gm9392 Pseudogene Detail

Summary

• Symbol
  Gm9392
• Name
  predicted pseudogene 9392

• Feature Type
  pseudogene
• IDs
  MGI:3643262
  NCBI Gene: 668838
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:46470288-46470841 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 30.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643262	pseudogene	Chr7:46469592-46470924 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013900	pseudogene	Chr7:47221063-47221948 (-)
A/J	MGP_AJ_G0013919	pseudogene	Chr7:46245113-46246037 (-)
AKR/J	MGP_AKRJ_G0013853	pseudogene	Chr7:47551874-47552427 (-)
BALB/cJ	MGP_BALBcJ_G0013877	pseudogene	Chr7:46247764-46248297 (-)
C3H/HeJ	MGP_C3HHeJ_G0013710	pseudogene	Chr7:48029354-48029907 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014310	pseudogene	Chr7:49489709-49490584 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010594	pseudogene	Chr2:110076237-110076795 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013694	pseudogene	Chr7:51154980-51155533 (-)
DBA/2J	MGP_DBA2J_G0013774	pseudogene	Chr7:45922515-45923068 (-)
FVB/NJ	MGP_FVBNJ_G0013772	pseudogene	Chr7:45726374-45727357 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013798	pseudogene	Chr7:49764873-49765426 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014267	pseudogene	Chr7:46756099-46756652 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0012952	pseudogene	Chr7:34781870-34782422 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9392
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000087298 (Evidence)
• NCBI Gene
  668838

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087298	Ensembl Gene Model | MGI Sequence Detail	554	C57BL/6J
transcript	ENSMUST00000119337	Ensembl | MGI Sequence Detail	554	Not Applicable
polypeptide	C5H0E8	UniProt | EBI | MGI Sequence Detail	184	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• EC
  3.6.5.2
• InterPro Domains
  IPR027417 P-loop containing nucleoside triphosphate hydrolase
  IPR038851 Ras-related protein Rap1
  IPR001806 Small GTPase
  IPR020849 Small GTPase, Ras-type
  IPR005225 Small GTP-binding protein domain

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;